Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42200 164 / 3e-46 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 147 / 5e-40 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G69170 138 / 4e-36 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G02065 128 / 4e-33 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT5G43270 127 / 3e-32 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT3G60030 129 / 1e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT5G50570 122 / 6e-31 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 122 / 6e-31 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G15270 117 / 7e-31 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G27360 122 / 2e-30 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016275 [exp] 429 / 2e-149 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10021034 [exp] 262 / 2e-83 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 256 / 5e-81 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10036812 [exp] 134 / 2e-34 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 133 / 1e-33 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021614 [exp] 131 / 1e-33 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10000643 [exp] 132 / 5e-33 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 130 / 9e-33 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10028181 [exp] 126 / 3e-32 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048500 [exp] 211 / 9e-64 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.002G142400 [exp] 134 / 1e-34 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.015G060400 [exp] 135 / 4e-34 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.014G057700 [exp] 129 / 1e-33 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.001G398200 [exp] 125 / 2e-33 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.011G116800 [exp] 125 / 6e-33 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.014G057800 [exp] 129 / 1e-32 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.003G172600 [exp] 129 / 3e-32 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 128 / 3e-32 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.004G046700 [exp] 120 / 3e-32 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10012020 pacid=23161435 polypeptide=Lus10012020 locus=Lus10012020.g ID=Lus10012020.BGIv1.0 annot-version=v1.0 ATGGACATTGGAGGCTCTGGAGCAGCCTCTTCTCACTCTGAGTTCAACAACAACAACAACATCAATGGGTTGAAATTTGGCAAAAAGATTTACTTTGGGG ATCACATGGGTCTTCTCTCCACCACTCAACCTCCTCAACCTCCCACCACCAAACCCTCCAGGCAGCAGAATCAGAACCAGCAGCAGCAAATTCCCAGGTG CCAAGTTGAAGGGTGTGGAGTGGATCTGAGCGATGCTAAGGGTTACTATTCTAGGCATAAAGTCTGTGGCGCTCATTCGAAGACCTCTACTGTTGTTGTT AATGGCTTGCAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTCCATCTTTTGGCGGAATTCGACCAAGGAAAAAGGAGTTGCAGGAGGCGACTAGCTGGCC ATAACGAGAGACGTAGGAAGCCATCACCTGGCTCGATGTTGTCTCCTCGCTATGGCAGGCTCTCATCCTCTTTCTTTGATAACAGCATCAGCAGCAGGAA TGGTGGCGGATTCCTTCTCGACTTCAGCGCATTCCCCAAGTCATCGTCTCGCAACGACATTCCTGCTTGGCAGAACAACACCAACTGCAGCTCTCAGAAT CCTCCTCCGCCTAACCTCTACCCGGGTGAATGTTATAACACAGGGGTCAGCTTTGTGGATTCGAGCTGTGCTCTCTCTCTTCTGTCAAATGAACAACAAT GGAGCAGCTCTACAACACCAACCAGAGCTCCCATTGCGACTACAGCAACCATTACCGCCACTTCATACCCTACCACTTGGGGCACTGCGAACGGAACGTT GATGCATCAGTCCGATTATATCGGTCTTGGCCACACCGGATCTCAACTCTCGGCCCATCTCAACATGGAGGACCACTCCAGCAGACCTTATGGCTCGTCG TCCGATCATCAGCAGCATATCAACTGGAAGCCATCACCAGGCTCGCTGTTATCTCCTCGCTATGGCAGGCTCTCATCCTCTTTCTTTGATAACAGCATCA GCAGCAGGAATGGTGGCGGATTCCTTCTCGACTTCAGCGCATTCCCCAAGTCATCGTCTCGCAACGACATTCCTGCTTGGCAGAACAACACCAACTGCAG CTCTCAGAATCCTCCTCCGCCTAACCTCTACCCGGGTGAATGTTATAACACAGGGGTCAGCTTTGTGGATTCGAGCTGTGCTCTCTCTCTTCTGTCAAAT GAACAACAATGGAGCAGCTCTACAACAACAACCAGAGCTCCCATTGCCACTACAACAACCATTACCACCACTTCATACCCTACCACTTGGAGCACTTCAA ATGGAACATTGATGCATCACTCTGATTATATTGGTCTTGGGCACACCGGATCTCAACTCTCGGCCCATCTCAACATGGAGGACCACTCCAGCAGACCTTA TGGCTCGTCGTCCGATCATCAGCAGCATATCAACTGGTCGCTTTAG
AA sequence Show only first row Show all	>Lus10012020 pacid=23161435 polypeptide=Lus10012020 locus=Lus10012020.g ID=Lus10012020.BGIv1.0 annot-version=v1.0 MDIGGSGAASSHSEFNNNNNINGLKFGKKIYFGDHMGLLSTTQPPQPPTTKPSRQQNQNQQQQIPRCQVEGCGVDLSDAKGYYSRHKVCGAHSKTSTVVV NGLQQRFCQQCSRFHLLAEFDQGKRSCRRRLAGHNERRRKPSPGSMLSPRYGRLSSSFFDNSISSRNGGGFLLDFSAFPKSSSRNDIPAWQNNTNCSSQN PPPPNLYPGECYNTGVSFVDSSCALSLLSNEQQWSSSTTPTRAPIATTATITATSYPTTWGTANGTLMHQSDYIGLGHTGSQLSAHLNMEDHSSRPYGSS SDHQQHINWKPSPGSLLSPRYGRLSSSFFDNSISSRNGGGFLLDFSAFPKSSSRNDIPAWQNNTNCSSQNPPPPNLYPGECYNTGVSFVDSSCALSLLSN EQQWSSSTTTTRAPIATTTTITTTSYPTTWSTSNGTLMHHSDYIGLGHTGSQLSAHLNMEDHSSRPYGSSSDHQQHINWSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	0	1
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10016275 [exp]	1.0	0.9575
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	2.0	0.9434
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	2.4	0.9314
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	2.8	0.9200
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	3.6	0.8982
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	3.7	0.9133
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	4.5	0.9155
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	5.2	0.9038
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	5.5	0.8932
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	6.3	0.9037

Compare expression of checked genes

Lus10012020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.