Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06810 397 / 8e-126 Mitochondrial transcription termination factor family protein (.1) AT4G19650 308 / 2e-97 Mitochondrial transcription termination factor family protein (.1) AT5G45113 194 / 5e-56 mitochondrial transcription termination factor-related / mTERF-related (.1) AT3G60400 149 / 2e-38 Mitochondrial transcription termination factor family protein (.1) AT1G74120 55 / 1e-07 Mitochondrial transcription termination factor family protein (.1) AT5G54180 45 / 0.0001 PTAC15 plastid transcriptionally active 15 (.1) AT1G61970 44 / 0.0003 Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039774 [exp] 400 / 7e-134 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 285 / 9e-89 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 263 / 1e-81 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 133 / 7e-33 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10021146 [exp] 46 / 5e-05 AT1G74120 468 / 3e-163 Mitochondrial transcription termination factor family protein (.1) Lus10007988 [exp] 46 / 9e-05 AT1G74120 475 / 6e-166 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 44 / 0.0002 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 44 / 0.0003 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 43 / 0.0007 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048200 [exp] 509 / 1e-175 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048300 [exp] 490 / 2e-168 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 472 / 3e-161 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.012G118200 [exp] 347 / 2e-112 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 134 / 2e-33 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 81 / 1e-17 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 47 / 2e-05 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.018G051600 [exp] 47 / 4e-05 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10012021 pacid=23161455 polypeptide=Lus10012021 locus=Lus10012021.g ID=Lus10012021.BGIv1.0 annot-version=v1.0 ATGATCCATTTGCAGAAACTTAGAGTGAACTCTGTCCTTAAATGGATTTCTTCAAATTCTGTGTGCCGTGAATTTCTTCCCGTGGTCGGTTCCTGGTTCT CCATAGCTAGAAACCCTAGGTTTTATAAAGGCTCTTTGGAGAACGGATGCAACAATAAGCTTATTAGCAGAATAACTCCTTCAATGAGAAAAGATGCTCA AGCTGCCTTGTTAGACTACCTGCACGTCAACAGAGGGTTTGAGTACACTGTAGCCGAGAACATGAGTCGAAATTCGCCTCAATTCCTCGGCGAATTGATA CGAAAGGCCAATCCGGAAGGCGACACTGCGCTAGCTGTAACACGGTTCGTCTGTTATCATCCAATCAACGAATTCGAACCCTTCTTCGAGAGCCTCGGAT TGAAAGCTTCCGAGTACTCTCCATTATTGCCTCGGAAGCTGATGTACTTGACCGATGATGAGTTGCTTCTCGAGAATTATCGCGTATTGTGTAGCTACGG GATCAAGAGGTGCATGATTGGTAGGATTTACAGAGAAGCAACAGAAGTGTTTCGGTATGGCAGTGGAGTGTTGTCGAAGAAACTCATGGCTTATGAACAA TTAGGGCTCAGCAGTGGCTCTGTAGCTAGGACTGTGGCTTGCTTCCCAAACCTATTGATTGGAGATGTGGATGTGGATTTAGTCAATGTGCTCGAGATGC TAAAGAGTATGGGGATTGAGTTCGGCTGGATCGAGGAGCAGTTATCGCAGAGGAATTCGTGTAATTGGAGGCAGTCGTTTCTGCTGCTGAAATCGTTAAG TAACATTGCTTGTATGGAACGGGATAAGCTGCGAGAGATTGTAGCCGATCATCCCGAGATCATGTTCGAAGGGGAGCATTCCTTACTGCTGATAGGGTTC CTGCTGAAAATGGGATCGTCGATCGACGAGATTGTATCTTCGATCCTACAAAACTTCCCTAAAAAAATGCAGGTTGCGAAGTTCCTATCGAATTTAAGGC AGTGCGTTCACATGCTGGACGAGATTCATCTGGAGCCCTACGAGATAAGAGACATCGTCCATTCTCATTCGTTGTTAATGGGTTCATACACTATGAAGAA GACCAAGACTTTGCTGTACCGTCTGAACGTAGGGAAAAAATTGCTACGCGAGATCGTTCGAGAGAATCCAGAAGAGATGAAGAACTGGGTCATCGGAGTT GGAGTTACGCCGCTGCAGAGTCCAGGAGGGAAGCAGAAATCCAAATCTTCAAAAACGAAGTTCTTGTCCGGCCTGGGATACGAGGAGAACTCAGTAGAAA TGGCGAGAGCTGTGAAGGTTTTCCGGGGGAAAGGGTTCGAGTTGCTGGAGCGATTCGATTGTTTAGTGAATGCCGGACTGAGCAAAGAAGATGTCGTTAA GATGGTAACAACGTCTCCTCACGTTCTTAATCAGTCGAAGGACGTTACCCAGGAGAAGATCAAGTTTCTGGTGAATGAGATGGGGTACGACTTAACTTGT CTGGTTCGGTTTCCATCTGTTTTGAACTTCAGAGTGGAGAGGGTAAAGCTTAGGTTACTTATGTATGATTGGCTGAAAGGTGAAGGTGTGGTTAGGTTGA ACCTGTCGTTGAGTAATCTGATTGCTTCTTCCGATTCGGTGTTCTACAGTCGGTATGTTGAACTCCACAGCGGAGGTCCTCACGTTTGGCAGGACTTGAA GAAGAAGATCTATGGGGAGTAA
AA sequence Show only first row Show all	>Lus10012021 pacid=23161455 polypeptide=Lus10012021 locus=Lus10012021.g ID=Lus10012021.BGIv1.0 annot-version=v1.0 MIHLQKLRVNSVLKWISSNSVCREFLPVVGSWFSIARNPRFYKGSLENGCNNKLISRITPSMRKDAQAALLDYLHVNRGFEYTVAENMSRNSPQFLGELI RKANPEGDTALAVTRFVCYHPINEFEPFFESLGLKASEYSPLLPRKLMYLTDDELLLENYRVLCSYGIKRCMIGRIYREATEVFRYGSGVLSKKLMAYEQ LGLSSGSVARTVACFPNLLIGDVDVDLVNVLEMLKSMGIEFGWIEEQLSQRNSCNWRQSFLLLKSLSNIACMERDKLREIVADHPEIMFEGEHSLLLIGF LLKMGSSIDEIVSSILQNFPKKMQVAKFLSNLRQCVHMLDEIHLEPYEIRDIVHSHSLLMGSYTMKKTKTLLYRLNVGKKLLREIVRENPEEMKNWVIGV GVTPLQSPGGKQKSKSSKTKFLSGLGYEENSVEMARAVKVFRGKGFELLERFDCLVNAGLSKEDVVKMVTTSPHVLNQSKDVTQEKIKFLVNEMGYDLTC LVRFPSVLNFRVERVKLRLLMYDWLKGEGVVRLNLSLSNLIASSDSVFYSRYVELHSGGPHVWQDLKKKIYGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	0	1
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	2.0	0.8187
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	3.2	0.8064
AT1G02290			unknown protein		Lus10028606 [exp]	7.2	0.7918
AT1G02290			unknown protein		Lus10018907 [exp]	11.2	0.7852
AT2G14850			unknown protein		Lus10002120 [exp]	11.6	0.7281
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	13.4	0.7892
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	15.5	0.7658
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	18.3	0.7934
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	18.5	0.7347
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	20.0	0.7736

Compare expression of checked genes

Lus10012021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.