Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06820 373 / 1e-118 SRF2 STRUBBELIG-receptor family 2 (.1) AT4G22130 308 / 6e-96 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT3G14350 280 / 5e-84 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G53730 278 / 8e-83 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT1G78980 258 / 5e-76 SRF5 STRUBBELIG-receptor family 5 (.1) AT2G20850 252 / 5e-73 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G03390 247 / 4e-71 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G11130 240 / 1e-68 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G13065 231 / 4e-66 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G20650 204 / 6e-59 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016276 [exp] 1354 / 0 AT5G06820 669 / 0.0 STRUBBELIG-receptor family 2 (.1) Lus10015549 [exp] 306 / 7e-92 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 295 / 3e-89 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 293 / 3e-89 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10020030 [exp] 291 / 5e-88 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10039795 [exp] 271 / 3e-80 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 265 / 1e-77 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 263 / 1e-77 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033333 [exp] 261 / 9e-77 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190700 [exp] 829 / 0 AT5G06820 696 / 0.0 STRUBBELIG-receptor family 2 (.1) Potri.004G005301 [exp] 302 / 4e-92 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 300 / 3e-91 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 286 / 5e-86 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 278 / 5e-83 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.019G103900 [exp] 280 / 6e-83 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.014G001200 [exp] 271 / 2e-80 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.013G144600 [exp] 267 / 2e-78 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 264 / 1e-77 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.007G002600 [exp] 259 / 2e-76 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012022 pacid=23161399 polypeptide=Lus10012022 locus=Lus10012022.g ID=Lus10012022.BGIv1.0 annot-version=v1.0 ATGGCGACGCAACAGGCGTATGTATTTCACATTCTGATCCTTTTTCCGACGATTTTTGCTCTACGAGCTGCAGCGGCCACAACCGATCCCCCCGACGTTC TTGCACTTCAAGATCAGTATAGGGCGTTGAACAATCCGCCGCAACTGAAGCGGTGGAGGTTGGATGGAGGCGATCCGTGTGGGGAATCGTGGCAGGGAGT TATATGCTCCGGTCCATCAGTGATCCGCCTTAGGCTTCAGGGTCTGAATTTGAGTGGATTTCTTGGTAGCCAGTTCCATTTGCTCCACGGGCTGAGGCAA ATGGATCTTAGCTACAATAACATTACTGGTGAAATTCCATACAGCTTGCCGCCAAATGTTACTCACTTAAATTTAGCATGCAACAAGCTAGAGCAGAACA TTCCCCATTCTTTGCCTAGCTTTAAGCTTCTCAGAGTTCTAAACCTGAGCCATAATGTGTTGTCAGGACCCATCGGGAATGTGTTTTCTGGCCTACTAAA TCTGAGAGAAATGGATTTGTCATACAATAACTTCACTGGAGACCTTCCAAGCTCGCTTGCGTCACTAAAGAACATATCCAGACTGTTGCTGCAGAAAAAC CAGTTCACTGGATCAGTTGAACTCTTGGAAGATCTTCCTCTTATTGATCTGAACATCCAATCGAATTACTTCAATGGTACTATACCGTCTAAGTTTCAAA CAATACCAAATTTGTGGATGGACGGGAATCAGTTCCATCTGGCACCTGGTTATCCTCCATGGAGCTTTCCAATGGAGAATTCCACAACTGTTACGAAAAA CTTCAGCACTCGTCCTTCAAGCGAATCAAGCGCCATAGTCGAGAGCCATCCTGCAGCCATCGTCGAGAACCACCCTACTACTCTCAATGTGGTTAAACAC AGGAAAAGACTGCTGAGCCTAGGAGGAGTAGTGTTTGTAGTTGGCGGAGTGACTCTAGTGGTCACTGGTGCAGCAATCTTCATTGCCATGCACCTGAATA GATCTGATCATCCTGCAGCCGACACAATGAATGAAAATGCAGCTAGCACACCAACCTTTATTGATCCAACTCATACCCCTATCAGCCGACGATTGAGAAG TCGAAACCGGAGATTCTCTGGAGGAAAGAGCTTAGGCAGGAACAACAGGGCTCCAGCAAGTGCAAGAGTTTACACAGTGGCTGAGCTTCAGTATGCAACC AACAGCTTCAGTGAAGATCATCTTCTTGGAGAAGGTTCTCTTGGTTCTGTGTACAGAGCAGAGTTCCCTGATGGTCAAGTACTGGCAGTCAAGACCATAA ACACAGTGCCAATGTCCTTCGACGAAGAAGAGCTACTAATGGAAGTGATATGGACAGTGTCCCGTCTAAGGCACCCAAATCTCGTAGCCCTTCTCGGCTA CTGCGTCGAACACGGGCAGCATCTCCTCGTGTACGAACACGTCAGAAGCTTACCTCTTGACGAGCTTCTTCACAGCCAGAGATACAAACCCCTACCTTGG ACAGCACGCCTCAATATTGCATTAGGCGTAGCACGACTGCTCGAGTACCTGCACTGCACTTTCTCGCCTCCCGTCGCTCATGGAAACGTGAAAGCTGCCA ATGTGCTGTTCGACGAGGATCTGATCCCTCGAGTCTGCGATTCTGGGCTGGCTATCCTCAGGACTCTTACCTGCAACAGTGTGAAAGTGAAGGCTGCTGA GATGGCGCTCGAGGAGACAGGGTACATTGCACCTGAACATGGCGAACCGGGGAATGATAGTACCAAAGGCGACGTGTTTGCCTTCGGAGTTTTGCTTTTG GAGCTTCTGACGGGTAGGAAGCCTTTTGATGGTTTGCGGCCGAGAAAGGAGCAGTATTTGGTTAAATGGGCTTCTCGACGACTTCACGACAGCGAGGGGT TGGTTCAGATGGTTGATCCGTGTATCAACAGAAGGAGCTTGTCTTTGAAGTCTCTCTCTGGATTTGCAGACATCGTCTCCCTCTGTACTCAGGCAGAGAT GATTTTCCGACCATCAATGAGCGAGATCGCGGACTTATTGAGCCATCTGGTTCAGAAGTGTAGAATTGCAGCTGATGGAGAAAGTGATGATCCATTCGAT AGATCTTTTCGTTCTACAATTACTGGCTTCCCCAGCTCCCCCACTGTTAGCTACTACTCTCCTTAG
AA sequence Show only first row Show all	>Lus10012022 pacid=23161399 polypeptide=Lus10012022 locus=Lus10012022.g ID=Lus10012022.BGIv1.0 annot-version=v1.0 MATQQAYVFHILILFPTIFALRAAAATTDPPDVLALQDQYRALNNPPQLKRWRLDGGDPCGESWQGVICSGPSVIRLRLQGLNLSGFLGSQFHLLHGLRQ MDLSYNNITGEIPYSLPPNVTHLNLACNKLEQNIPHSLPSFKLLRVLNLSHNVLSGPIGNVFSGLLNLREMDLSYNNFTGDLPSSLASLKNISRLLLQKN QFTGSVELLEDLPLIDLNIQSNYFNGTIPSKFQTIPNLWMDGNQFHLAPGYPPWSFPMENSTTVTKNFSTRPSSESSAIVESHPAAIVENHPTTLNVVKH RKRLLSLGGVVFVVGGVTLVVTGAAIFIAMHLNRSDHPAADTMNENAASTPTFIDPTHTPISRRLRSRNRRFSGGKSLGRNNRAPASARVYTVAELQYAT NSFSEDHLLGEGSLGSVYRAEFPDGQVLAVKTINTVPMSFDEEELLMEVIWTVSRLRHPNLVALLGYCVEHGQHLLVYEHVRSLPLDELLHSQRYKPLPW TARLNIALGVARLLEYLHCTFSPPVAHGNVKAANVLFDEDLIPRVCDSGLAILRTLTCNSVKVKAAEMALEETGYIAPEHGEPGNDSTKGDVFAFGVLLL ELLTGRKPFDGLRPRKEQYLVKWASRRLHDSEGLVQMVDPCINRRSLSLKSLSGFADIVSLCTQAEMIFRPSMSEIADLLSHLVQKCRIAADGESDDPFD RSFRSTITGFPSSPTVSYYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Lus10012022 [exp]	0	1
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	3.7	0.8942
AT3G29310			calmodulin-binding protein-rel...		Lus10038064 [exp]	11.6	0.8819
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	12.5	0.8882
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	19.3	0.8850
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	24.9	0.8845
AT3G28370			unknown protein		Lus10014503 [exp]	28.8	0.8669
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	31.6	0.8799
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	32.7	0.8807
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10021408 [exp]	33.6	0.8819
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	37.8	0.8810

Compare expression of checked genes

Lus10012022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.