Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06830 599 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016277 [exp] 964 / 0 AT5G06830 626 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059500 [exp] 684 / 0 AT5G06830 708 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05600 [flax] [poplar] DUF773 CDK5 regulatory subunit-associated protein 3
Representative CDS sequence Show only first row Show all	>Lus10012023 pacid=23161495 polypeptide=Lus10012023 locus=Lus10012023.g ID=Lus10012023.BGIv1.0 annot-version=v1.0 ATGCAGAATCAGGACGACATTCGGAACCTTCCAATCGAAATCACCTTCTCTCAACTCGGAGAATGGCTGGTTGATCGGAAGAGAATACCAGCTGATTGGA GGAAGAAGATTGCAGCCATCAGAGCTTGGATTTCCAAGGAGTTTTCCTCCCTGCCCAAGGACTTGGATCCTTATTTCCTGAATCTGGACCCTGAAGAGGT TGGTTACCTGGAGGTGAAAAAGATATACGAAATCCTCTCCAAGTCAACTAGTCCTGCCGATGCTTGGGAATCGATTGTACAATCTTTTGAAGAAGACTAT ATATTCCTTGGTGAGGCTGCACAAACAATAATCCAGAATGTATCTTACGAGATCCCGTATCAGAGAAAGCATGTGCAGAAGATCCAGCAACAGTTGGCTG AACTAGAGCGCAAGGAACCTGATGTGAAAAGGAGTGCAGCTTTAACAGCGGCAAAATATGTCGAGGCTTGTCAAGAACTTGGTTTGCAGGGGAACAACGT GAGGTTAGAACTTCTAGAGACTGCAAAGTCTCTCCCAAGCGCATTTAGCAAGATTTTGGAAGTTATAAATGGCGATAGTATGTCAAGAGCCATTGACTAT TATTCTGATTTTGTCAGAGATGTTCACGCCGAGAAGGATAAATCTTCAGCAGCTGTCTTGTCAAGTTTGAGGGGCATCCGTGATAAACCTCCCTCGCTGA ATGTCTCTGCTGCACACGAGACCTCGGCTGGAAACCTAGAGTCAAATGCTGTGGAGCTGAAAGATTCGGCAGGGGAAATCAATCGGGATATCAGCACTGT AGAAGAGACGTATGATGGGGGAAACGGTTTGGGGCCTTATGAATTAGTAAACGCCAATGAGATCTCGCAGGAGCCTTCAAGAAATCAAGATGCAGCGAAT AAGGGGGAAGATCAACATCCGGAAATCGATTGGGATGTTAGTGTCGAAACACCACAGATTGATGTCATAGATGATGAAGGTCACTCCAATTTGGGTACAG GGGATCCTATTTACACTGCCGATGATGACTCAGCTAACACTGCTGTGGGAAAGGAAGACAGGAGCCAGCTTCTAGAGACGGAGTACCGTAACAAAATTCT TGATGATCTTTATGAGGTCAAATCGTTTTTGTGTCAACGGGTGGGAGAGTTGCGTAATGGAGAGACTCTGTCGTTGCAACATCAAGTCCAGTCAGTTTCC CCCATGGTACTGCAGCAGTATGCTCCTGATGCCATCGAGAAGATGCTGTCTGACATTTCTTCGGCCATATCGTTGCTTACTGATAGGAAAACTCAAGACC TGATCATGATTCTCAACTCCAAAAGGTTCCTGGACAGACTGGTGAGTACCTTGGAGGAGAAGAAGCATCACGAGTCGAAGCTAAAAGATGGTTTGAAAGA CTTGGCTATTAAACGCATGGAGCTTCACAACTCTTTGTCCTCTTCGTGGCCGAAACAGGAAGCAGCGCTTACAAAAACAAGGGAGTTGAAGAAGCTCTGT GAGAGTACATTGTCCTCCATGTTCGACGGGAGACCTGTTCATATAATCGGAGAGATCAACTCGTTGCTGAGTAGCGGCATGGGGGCTTAG
AA sequence Show only first row Show all	>Lus10012023 pacid=23161495 polypeptide=Lus10012023 locus=Lus10012023.g ID=Lus10012023.BGIv1.0 annot-version=v1.0 MQNQDDIRNLPIEITFSQLGEWLVDRKRIPADWRKKIAAIRAWISKEFSSLPKDLDPYFLNLDPEEVGYLEVKKIYEILSKSTSPADAWESIVQSFEEDY IFLGEAAQTIIQNVSYEIPYQRKHVQKIQQQLAELERKEPDVKRSAALTAAKYVEACQELGLQGNNVRLELLETAKSLPSAFSKILEVINGDSMSRAIDY YSDFVRDVHAEKDKSSAAVLSSLRGIRDKPPSLNVSAAHETSAGNLESNAVELKDSAGEINRDISTVEETYDGGNGLGPYELVNANEISQEPSRNQDAAN KGEDQHPEIDWDVSVETPQIDVIDDEGHSNLGTGDPIYTADDDSANTAVGKEDRSQLLETEYRNKILDDLYEVKSFLCQRVGELRNGETLSLQHQVQSVS PMVLQQYAPDAIEKMLSDISSAISLLTDRKTQDLIMILNSKRFLDRLVSTLEEKKHHESKLKDGLKDLAIKRMELHNSLSSSWPKQEAALTKTRELKKLC ESTLSSMFDGRPVHIIGEINSLLSSGMGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06830			unknown protein		Lus10012023 [exp]	0	1
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	4.7	0.9001
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	4.8	0.9035
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	6.2	0.8829
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	8.5	0.8991
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	10.7	0.8804
AT2G42780			unknown protein		Lus10031380 [exp]	12.0	0.8809
AT5G58740			HSP20-like chaperones superfam...		Lus10040670 [exp]	12.6	0.8568
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	13.4	0.8960
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	14.8	0.8877
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	16.0	0.8958

Compare expression of checked genes

Lus10012023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.