Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57890 808 / 0 Tubulin binding cofactor C domain-containing protein (.1.2) AT2G42230 790 / 0 C-CAP/cofactor C-like domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016279 [exp] 937 / 0 AT3G57890 747 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10023821 [exp] 930 / 0 AT3G57890 875 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10021031 [exp] 797 / 0 AT3G57890 726 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10006364 [exp] 51 / 1e-06 AT4G39920 344 / 1e-117 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Lus10012318 [exp] 50 / 2e-06 AT4G39920 333 / 2e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049000 [exp] 872 / 0 AT3G57890 852 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Potri.006G059100 [exp] 860 / 0 AT3G57890 876 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Potri.005G074700 [exp] 48 / 1e-05 AT4G39920 332 / 6e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF07986 [flax] [poplar] TBCC Tubulin binding cofactor C
Representative CDS sequence Show only first row Show all	>Lus10012025 pacid=23161487 polypeptide=Lus10012025 locus=Lus10012025.g ID=Lus10012025.BGIv1.0 annot-version=v1.0 ATGGTGGACGCCGTCGAACCACCGTCGACGAGCGAACCGGATCCGTCCACGACCACCCCGAGGTCCGCCGTCCAAATCCACCCCCGCCGGGAGCCGTTCG AGCATGGACTCCTCCCAATCCCCAAGCTAATCTTCCCGGACCCGCTGCAGACCCTCGGTCAACTCCGGCATAAGCTCGCCTCCATCTCCCCCGAGCTGCG GCGTGTCGACGCGGTCGCCCTCTCTGACGCGCTGCAGATCTCGCCTGAACACGCCGGGCTGGTGCTTGATACCTTAGGTGCCGTGCTCCATTCGGAGCCT GAGCTGATTGATCCCGCAGGGGCGGATTTGCGTGATCTGATACTGTTTCTGTATATACAATCGTATAAGAAGCTGCTTCCGAGGACGCATAAGGACTCCG CTGCCGTGGCTGATGTTTGGCCTTCCACGTCGGCTTTCGATGGTTACTTGTCCGCTCTATCGCCGCTTCAGCTTGTACGCAGCAACAGCCGCCGTTTCAT GCCATCACAGGCTGATGAAGAGGCTCATCAGTTGTCCTATTTACAAAAGCACATGGGAAACATTCTTTCTCTGCTGGCAGAACCTGTTGAAGGAGAAGGA GAAAGTGAAGAGTCCCTGGTTTTGACCATGGAAGGACTGGAGCACCTAGGATTTCTTGTTCAGTTTTGCGGAAAGGGTTCGGAAGCAGTTGCTTTAAGCC AAGCTGCTCCATTCTTTGCCAATTCAGATCCTGACATGCCAGCTGCTCCTGTCCCTGCTTCTGAAGTCCTGATGTGGATATCAGAAAGCATTTCCTCCGC ATTAGAGACTATGACTGAAAGAATTTCTGCTAAAGAGAATGGTTCCCCCAGTGCATCTGATCAAGACGTACCCATGGCTGATACCTGCAATAACTCCATC AAGATATCACCTAGTTCCAGAGGCACAAGCTTCATTGAGGGTATCTCCAAGACCTCATATGTAAAACAGGCATCAGATCTTAAAGGATCCGCAGTAAAGG TTCTAAATTGTCATGATTCCGTGATTTACATCCTAGCACCGTTAAGATATGCCACAGTCTATGGATGCTCCGATTCTACAATAGTTCTTGGAGCTGTGGG GAAGGCTGTAAGGATCGAACACTGCGAGCGGGTTCACGTAATCACCGCTGCAAAAAGAGTATGTATTGCAAATTGCCGAGAGTGTGTGTTCTTTCTCGGG GTGAACCAGCGGCCACTCATGGTTGGTGATAACCATAAGCTACAAGTGGCACCATACAACACCTTCTACTCCGATCTGGAAGCGCACATGGCGCAAGCTG CCGTTCAAGCAAGTATCAACAAGTGGGATGAGCCAATCGCCTTGGGGGTGGTCGATCCTCACGATTCATTATCGCATCCGGCAGGTGTCTCTGACGTTCA AGCGGAGACAGCCGCACGGATAGATCCCAACCATTTCACGAACTTCCTGATTCCCAACTGGTTTGGAGGCGAATCACCCGGGTCGACGAAAGATAACCCG TTCGCTCTGCCAGACAACTACATGGAATCCCGTCAGAAAAATCTAAAAAGCTTGGAAGAGATGAAGCAATTACTGAGGGAAACTCCACTCGAAGAAAGCC GGAAGCGAGAACTATCTTCTGCACTCCACACGCTGTTCAAAGACTGGTTATATGCTTCAGGGAACATCCGCCAACTTTACTGCCTACAAAGCGACTAA
AA sequence Show only first row Show all	>Lus10012025 pacid=23161487 polypeptide=Lus10012025 locus=Lus10012025.g ID=Lus10012025.BGIv1.0 annot-version=v1.0 MVDAVEPPSTSEPDPSTTTPRSAVQIHPRREPFEHGLLPIPKLIFPDPLQTLGQLRHKLASISPELRRVDAVALSDALQISPEHAGLVLDTLGAVLHSEP ELIDPAGADLRDLILFLYIQSYKKLLPRTHKDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFMPSQADEEAHQLSYLQKHMGNILSLLAEPVEGEG ESEESLVLTMEGLEHLGFLVQFCGKGSEAVALSQAAPFFANSDPDMPAAPVPASEVLMWISESISSALETMTERISAKENGSPSASDQDVPMADTCNNSI KISPSSRGTSFIEGISKTSYVKQASDLKGSAVKVLNCHDSVIYILAPLRYATVYGCSDSTIVLGAVGKAVRIEHCERVHVITAAKRVCIANCRECVFFLG VNQRPLMVGDNHKLQVAPYNTFYSDLEAHMAQAAVQASINKWDEPIALGVVDPHDSLSHPAGVSDVQAETAARIDPNHFTNFLIPNWFGGESPGSTKDNP FALPDNYMESRQKNLKSLEEMKQLLRETPLEESRKRELSSALHTLFKDWLYASGNIRQLYCLQSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57890			Tubulin binding cofactor C dom...		Lus10012025 [exp]	0	1
AT3G57890			Tubulin binding cofactor C dom...		Lus10016279 [exp]	1.0	0.9619
AT1G47670			Transmembrane amino acid trans...		Lus10032751 [exp]	8.1	0.8117
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	10.4	0.8234
AT1G47670			Transmembrane amino acid trans...		Lus10011668 [exp]	17.5	0.8053
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	17.5	0.8104
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	19.0	0.7231
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	19.9	0.8115
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021963 [exp]	20.3	0.8123
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	21.4	0.7248
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10001820 [exp]	23.0	0.7766

Compare expression of checked genes

Lus10012025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.