Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 1404 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1369 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1249 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 1087 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 1077 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1050 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1021 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 911 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 901 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 888 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016280 [exp] 1478 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1093 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1085 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1084 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1080 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 1009 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 917 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 899 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 789 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049100 [exp] 1417 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1392 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1283 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1277 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1276 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1142 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 1128 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1111 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 1109 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 1107 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10012026 pacid=23161469 polypeptide=Lus10012026 locus=Lus10012026.g ID=Lus10012026.BGIv1.0 annot-version=v1.0 ATGCAGAGGCCTCCGCCAGAGGATTTCCTCCTGAAGGAGACGAACCCACATTTAGGAGGTGGGAAGATAACCGGTGACAAGCTCACAAGCACTTATGATC TTGTGGAGCAGATGCAGTATCTCTACGTCCGGGTTGTGAAAGCCAAGGACTTACCAGCGAAAGATGTCACTGGAAGCTGCGATCCTTATGTGGAAGTGAG ATTGGGGAACTACAAGGGCACGACTCGCCATTTTGAGAAGAAGACGAATCCCGAATGGAGCCAGGTGTTTGCATTTTCGAAAGATCGTATCCAGGCTTCG GTGCTTGAAGTTACTGTGAAGGATAAGGACTTTGTGAAGGATGATTTCATCGGCCGTGTTATGTTCGATTTGAATGAGGTTCCGAAGAGGGTTCCACCCG ATAGTCCGTTGGCGCCTCAGTGGTATAGATTGGAAGATAGGAAAAATGACAAGGGGAAGGGTGAATTGATGCTTGCTGTTTGGATGGGGACTCAAGCTGA CGAAGCGTTCCCCGAGTCGTGGCATTCTGATGCTGCTACAGTGAGTGGCACCGATGCTCTTGCGAACATCCGGTCGAAAGTTTATCTTTCTCCCAAGCTG TGGTACTTGAGGGTTAATGTGATCGAAGCTCAGGACTTGATACCCAGCGATAAGGGGAGGTATCCGGAGGTGTTTGTTAAAGCTGTTTTGGGGAATCAAG CATTAAGGACAAGAATCTCTCCGAGCCGGACCATCAATCCAATGTGGAACGAAGATCTTATGTTTGTAGCTGCTGAGCCGTTTGAGGAGCCTTTGATTCT GAGTGTGGAAGATAGAGTTGCTCCGAACAAGGACGAAGTGCTGGGGAGATGCGCGATTCCTTTGCAGTATATGGATCGAAGGTACGACCACAAACCGGTG AATACAAGGTGGTTTAATCTCGAGAAGCATGTCGTTGTAGAAGGAGAAAAGAAGAAAGAACATAAATTCTCCAGCAGGATTCACATGAGGGTCTGTTTGG AAGGTGGCTACCATGTTCTCGACGAGTCGACTCACTACAGCAGCGACCTCCGTCCTACAGCCAAACAGCTCTGGAAATCGAGCATTGGAGTGCTCGAGCT CGGTGTTCTGAATGCTCAGGGATTGATGCCGATGAAAACTAAAGATGGCCGTGGGACAACAGATGCTTACTGTGTCGCTAAGTACGGCCAGAAGTGGGTT CGAACGAGGACGATCATTGACAGCTTTGCACCGAAATGGAACGAGCAGTATACATGGGAGGTGTTTGATCCTTGTACTGTTATCACCATTGGGGTATTCG ACAATTGCCATCTTCACGGAGGAGGAGACAAAGGCGGCGGTGGTGGCGGAGGTGCGAGAGATTCTCGAATCGGTAAGGTCAGGATTCGTCTTTCAACGCT CGAAACCGATCGTGTCTACACTCATTCGTACCCTCTTCTCATGTTGCATCCCAATGGTGTGAAAAAAATGGGAGAGATTCATTTGGCGATCCGGTTTACT TGCTCGTCTTTGCTGAACATGATGCATATGTACTCGCAACCGTTGCTGCCAAAAATGCATTACATTCACCCTTTGACCGTTAGCCAGCTGGACAGCTTGA GGCATCAGGCGACTCAGATCGTGTCCATGAGGCTGAGCAGAGCAGAGCCTCCGTTGAGGAAGGAGATCGTTGAGTACATGCTTGATGTCGGTTCGCACAT GTGGAGTATGAGGAGGAGCAAGGCTAACTTTTTCAGGATCATGGGAGTTCTTAGCGGGTTGATTGCTGTGGGGAAATGGTTTGATCAGATTTGCAACTGG AAGAATCCAATCACTACAGTACTGATCCACATTCTGTTCATCATACTCGTTCTCTACCCGGAGCTGATATTACCCACCATCTTTTTATACCTCTTCCTGA TCGGCGTGTGGTACTACCGTTGGCGCCCGAGGCATCCTCCTCACATGGACACCAGACTCTCCCATGCTGAGTCAGCACATCCGGACGAACTCGATGAGGA GTTCGACACATTTCCAACATCTCGTCCTTCTGATATCGTGAGGATGAGGTACGATCGTCTCAGGAGCATAGCCGGAAGGATTCAAACCGTGGTGGGAGAC TTGGCTACACAAGGAGAGAGGCTTCAGTCCTTACTCAGCTGGAGAGACCCTAGAGCCACCGCTCTTTTTGTGATATTCTGCTTGATTGCTGCCGTTGTTC TGTATGTTACTCCATTCCAGGTTGTGGCACTCCTCACTGGACTTTACGTGCTTCGACACCCCAGGTTCAGGCACAAGCTTCCCTCTGTGCCTCTCAACTT CTTCCGGCGGCTTCCTGCAAGGACAGACTGCATGCTGTGA
AA sequence Show only first row Show all	>Lus10012026 pacid=23161469 polypeptide=Lus10012026 locus=Lus10012026.g ID=Lus10012026.BGIv1.0 annot-version=v1.0 MQRPPPEDFLLKETNPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYVEVRLGNYKGTTRHFEKKTNPEWSQVFAFSKDRIQAS VLEVTVKDKDFVKDDFIGRVMFDLNEVPKRVPPDSPLAPQWYRLEDRKNDKGKGELMLAVWMGTQADEAFPESWHSDAATVSGTDALANIRSKVYLSPKL WYLRVNVIEAQDLIPSDKGRYPEVFVKAVLGNQALRTRISPSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYMDRRYDHKPV NTRWFNLEKHVVVEGEKKKEHKFSSRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGVLNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV RTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGGDKGGGGGGGARDSRIGKVRIRLSTLETDRVYTHSYPLLMLHPNGVKKMGEIHLAIRFT CSSLLNMMHMYSQPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNW KNPITTVLIHILFIILVLYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHAESAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGD LATQGERLQSLLSWRDPRATALFVIFCLIAAVVLYVTPFQVVALLTGLYVLRHPRFRHKLPSVPLNFFRRLPARTDCML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	0	1
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	1.0	0.8794
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	4.0	0.8497
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	5.2	0.8340
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	6.9	0.8145
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	10.2	0.8257
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	11.7	0.7859
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	12.0	0.8297
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	12.4	0.8114
AT1G16520			unknown protein		Lus10031193 [exp]	15.2	0.8062
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	19.0	0.7890

Compare expression of checked genes

Lus10012026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.