Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07100 103 / 8e-25 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT5G26170 100 / 6e-24 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT5G13080 98 / 1e-23 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT5G41570 99 / 2e-23 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT4G18170 102 / 3e-23 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G64000 99 / 3e-23 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT1G13960 104 / 4e-23 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G46130 95 / 6e-23 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT2G03340 103 / 1e-22 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT3G01080 102 / 1e-22 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012030 [exp] 568 / 0 AT4G12020 141 / 6e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10016282 [exp] 545 / 8e-177 AT4G12020 142 / 3e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012029 [exp] 270 / 1e-80 AT1G13960 108 / 4e-25 WRKY DNA-binding protein 4 (.1.2) Lus10007455 [exp] 216 / 2e-59 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029852 [exp] 218 / 5e-58 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10012028 [exp] 132 / 2e-33 AT5G51630 45 / 7e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) Lus10020886 [exp] 123 / 2e-28 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026409 [exp] 109 / 7e-27 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10001265 [exp] 109 / 1e-24 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120800 [exp] 112 / 1e-25 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 108 / 2e-24 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.011G087900 [exp] 108 / 4e-24 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 107 / 1e-23 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.006G224100 [exp] 99 / 1e-23 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.001G328000 [exp] 99 / 2e-23 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 98 / 3e-23 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.008G091900 [exp] 104 / 4e-23 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.014G164300 [exp] 103 / 8e-23 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.017G066860 [exp] 97 / 1e-22 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012027 pacid=23161396 polypeptide=Lus10012027 locus=Lus10012027.g ID=Lus10012027.BGIv1.0 annot-version=v1.0 ATGTCAAATCCAGCTGACGCCCCTGAAGAACTTAGTCTCCCCTGGGACTTTATGGATGGGGATTTTGTGCCACAAGAAGATGATGACCGGCTTGGGTTCC CCTTCGGGGCTGTTTGGCCCAATTCTAATTTGCTACAACAAGGAGATGATGATGCTCTGGCAGAAAGTGACGGGAAGCTAAGGTATTCTGATAATACTGC AGCAGGAAACCCTAAGCTTGCTTCGTTCGAAACCAAGAGTGAGGTTGATGTACTTGATGATGGTCACCACTGGAGAAAGTATGGCCAGAAACTTATAAAG GGAAGTTCTCACCCGAGGAGTTATTACCGGTGCACATATGTAGGATGCTCAACTAGAAAGCATCTGGAGAGGGATTCAATGAATCCCGAATTTGTCAAGA CCACTTACGAAGGGATACACAACCATGGTGTTGTAACACCTGGAGAAAAGGCTATCAGTCATAGCACTACAAGGCCATGTAGTAGCGATGACCCTGGTAA TGAATCAGATAATCGTTTCACAACTAAACTTGATTGTGAAAGTGGCTCAAACCTTATGAGTAAGTCGTTGAAGATCGGATCATATCACCTTAGAAGTGTC AGGAGTTACTACAGGTGCTGTTTCAAATACTCTGGAGGATGCAAAGCTACAAAGCAAATGGAAAGGGATCCAGATGATCCTGAATTTTATATTACCACTT ACCTTGGTTTCCACAACCACGATGCTGTATTGCCTAAACCAGAGGCTGCCCGTCATGGCACTACAGGGCCAGTGACTATTGGTGACTCATTCAGTATTGC ATCAGAAAATAGTGGCATAACTAGCCTTGATCAAGGAGGTGAAGGAAACTTTCTGAACGACTTATCGAGGATCACTTTGCAAAGAAGTGACAGTACACTA GAAGAGGAAGGACATGATAATAATGGTAAATTCCCTAGAGCCAAGTGTATCAATCATGTCGCTGTAGAGCCACTGACAGTTGGTGACTCTTTTGAAAGAA AAACAAAGACAATTGGTGACTCTCTCTGTACCGGATCAGACACTAGTGGCATCACTAGCCTTGATCTTAGAGGTGCAGAAAACAGGAGGAGTGACTCATT GCAGATTGGTTCATCAAAAGGCGACAGTATAATTGAAGAGGAAGGACACAGTAATAATGATAAATTCCGCAAATTTAAAAGGTGGTGTTACTACAAGTGC ACACATGCTGGATGTCCTGCTATCAAGACCATGCAGAGGGATTCAGATGATCCTGAATTTGTTATAACGAAAGTTCTGAATGCACACAGGCATGGTGATG TAGCTACTACAAAACGGCAGAGCAATAGTCTTGACACCGCAAAGGAATCAGGTGACTGGGAAGCTCCTTTGATGGGGGAAACACGACAAACTGCCTTGTT CAAAATAATGCGGTCTTTAAACGGGAACATGTACTCTTGTAATAAAAAAGGACTAGAAGAACTGAAAGAAATTGCTGTCCAATTGGAGGAAAAGAACTAT TCTGCCGCACATGATCATGATGATTACCTGCGCAAGATAGTTTTGGAGTTGGACAAGCTGGAGAACAAAGATGCGTCCATTTTGCTGCCACCTATCCCAG TAGGCATCGACACTAAGCCCCTTCATCCAGGAGTTCAAAATGCACACAGCAACGATGCAGCAAAACCTATTAGTGGCTCATTGAGGATTGGATCAGACGA CCGGAACAAATCATCTGTCCTTGATGTAAAAGGTGCAATCTTTGTTAATGATGATTCCATCAGTCGATCTGGTTGTTGCTCATGGAGTGGAGGATCGGGG AAAAAACATGCAAGTATCTTTGACCATCAAGTTGGGATGAGTTCATTTGCTGAAAATAGACGTAATGGAAAACTACTGTCACTTGATTCCCCACTTGTTT CTTACCTTCAAAAGCAACAAGAGGCAAAAATGGATTCAAAAAAGTGGTTCATCTATCAAAGTTCCATCTATATGGAAGAACTACACCTTTCAAAGTCCCC CACCTCGTATTTTTGTGCACAAATCTTCACGTCCATGTTCTTGCCATATTGCAATGTTCAACAGCTCTGGAACGGAGGAGAGCAGCAGCTTTTGGTAAAC CTGAATTGTCTAGATCTAAAGCATTCAAGTCTTGTTCGGATTCCGGACCTGTCAAAGGCTCAGAAACTCGAGAGCTTGAACCTCCAAGGCTGCGTAAACT TGGTCAGCGTCTCTTCTATTCAGCATCTCACCAACCTTCAAAATCTCAACCTCAAGCGCTGTAGAAATCTTAAGGGACTTCCAAGTCTGGTCAAGTTGAA GCTCCTCAAAACCCTCAATCTATCTCACTGCTCTAATCTCAGGAGACTTCCTCCATCACTTGGTTTCCTTTCCACCCTTTGTGAACTGAACCTCAGAAAC TGCGTCAAACTCGATATTCTCCCACGTAGTGTCGTAAAGTTGATGAGATCTCTGGAAATGCTCAATGTTTCTGGCTGCTCAAGTCTATGGAAATCGATTG AGGATACGGCCTTACCCCTGGAGCATCTACCTACCAGCAGTGAAAGTAGCATTTTCATGAACCAGTCCAATAGAGATGCTTCTCTTGAGCCACAACTGAC ACAAGAACCTGTGCAAGTGGATCCTGTGGTTGATTCGCCTTCACAAGAACTACCGTTGGATTTGAGCAATATATGGAGAAAAAACTCCGTAGAATCGGAT GATGTTAAAGCTTTTATGGCCACACCATTGATTGATTTCCTACCTTCAGGCGCCAGGATTAAGGAGTTATTAGCTCCTAATACAGATTGCTATTCCAATC CTTGCTCCTCATCTTCTGAAGACGTGGATTCCCCAGCCCAATCTGAGTAG
AA sequence Show only first row Show all	>Lus10012027 pacid=23161396 polypeptide=Lus10012027 locus=Lus10012027.g ID=Lus10012027.BGIv1.0 annot-version=v1.0 MSNPADAPEELSLPWDFMDGDFVPQEDDDRLGFPFGAVWPNSNLLQQGDDDALAESDGKLRYSDNTAAGNPKLASFETKSEVDVLDDGHHWRKYGQKLIK GSSHPRSYYRCTYVGCSTRKHLERDSMNPEFVKTTYEGIHNHGVVTPGEKAISHSTTRPCSSDDPGNESDNRFTTKLDCESGSNLMSKSLKIGSYHLRSV RSYYRCCFKYSGGCKATKQMERDPDDPEFYITTYLGFHNHDAVLPKPEAARHGTTGPVTIGDSFSIASENSGITSLDQGGEGNFLNDLSRITLQRSDSTL EEEGHDNNGKFPRAKCINHVAVEPLTVGDSFERKTKTIGDSLCTGSDTSGITSLDLRGAENRRSDSLQIGSSKGDSIIEEEGHSNNDKFRKFKRWCYYKC THAGCPAIKTMQRDSDDPEFVITKVLNAHRHGDVATTKRQSNSLDTAKESGDWEAPLMGETRQTALFKIMRSLNGNMYSCNKKGLEELKEIAVQLEEKNY SAAHDHDDYLRKIVLELDKLENKDASILLPPIPVGIDTKPLHPGVQNAHSNDAAKPISGSLRIGSDDRNKSSVLDVKGAIFVNDDSISRSGCCSWSGGSG KKHASIFDHQVGMSSFAENRRNGKLLSLDSPLVSYLQKQQEAKMDSKKWFIYQSSIYMEELHLSKSPTSYFCAQIFTSMFLPYCNVQQLWNGGEQQLLVN LNCLDLKHSSLVRIPDLSKAQKLESLNLQGCVNLVSVSSIQHLTNLQNLNLKRCRNLKGLPSLVKLKLLKTLNLSHCSNLRRLPPSLGFLSTLCELNLRN CVKLDILPRSVVKLMRSLEMLNVSGCSSLWKSIEDTALPLEHLPTSSESSIFMNQSNRDASLEPQLTQEPVQVDPVVDSPSQELPLDLSNIWRKNSVESD DVKAFMATPLIDFLPSGARIKELLAPNTDCYSNPCSSSSEDVDSPAQSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	0	1
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	5.0	0.8425
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	6.2	0.8285
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	7.2	0.8126
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	7.9	0.7881
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	9.2	0.8118
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	10.5	0.8261
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	11.3	0.7908
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	17.5	0.7663
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10007736 [exp]	18.9	0.7674
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	19.3	0.7578

Compare expression of checked genes

Lus10012027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.