Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51630 44 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G45200 44 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 43 / 0.0003 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012027 [exp] 164 / 1e-44 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012030 [exp] 122 / 2e-30 AT4G12020 141 / 6e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10016282 [exp] 112 / 5e-27 AT4G12020 142 / 3e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10029852 [exp] 94 / 1e-20 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10007455 [exp] 91 / 8e-20 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 61 / 9e-10 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10020886 [exp] 57 / 2e-08 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020237 [exp] 42 / 0.0005 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10029628 [exp] 42 / 0.0006 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 45 / 5e-05 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 44 / 0.0001 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 43 / 0.0002 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 43 / 0.0003 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 43 / 0.0003 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 43 / 0.0004 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 42 / 0.0007 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 42 / 0.0008 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012028 pacid=23161410 polypeptide=Lus10012028 locus=Lus10012028.g ID=Lus10012028.BGIv1.0 annot-version=v1.0 ATGCAGCTTTTGGTGAACCTGAAGTCTCTAGATGTAAACCATTCCGGCCTGCTTCAGATTCCAGACCTGTCAAAGGCTCAGAAACTCCATAGCTTGAACC TCGAAGGCTGCTTAAACTTGGTCGGCGTCTCTTCTATTCAACATCTTACCAACCTTCAAAATCTCAACCTCAAACGCTCGTCTGGAGATGCTTCTCTTGA TCCACAACTGACAGAGGAACCCGTGCAAGTGGATCCTGCGGTAGATTCTCCATCACAAGAACTACCGTTAGATTTGAGCGATATATGGAGAAAGAACTCT GTAGAATCTGATGATGTTAAAGCTTTTATGACCACTCCATTGATTGATTTCCTACATTCAGGTGCCAGGATTAGGGAGTTGTTAGCTCCTAATATGGATT ACTATTCCAATGCTTGCTCCTCATCTTCTGAACATGTGGATTCCCCAGCCCGAAACAATGTAGATAATGATGATCACGAAAAACATGAAGATTCCGAGAT AAGAAAGAATAAGAGGCCTCACGAACTCTCGAAAGGCTCGGAGGAGATATCCCTGCTGCTCAAGAAAATAAGAACCAGCTACAACAACAATGAGGCCGAC ACTGGTCTCCCTTGGCATTCGGTCGAATCGTTGGAAGAGTATCTGAGTAGTTTGTTAGAAGATCTCGGCAATGCTAACGTAGGCAGCAGCAACCTTGAGA ACATTCTGCATGCCGTGATGGAACTCTACTCCTGTAGTTCGGACCACTACGACAAGGCAACGGCCGCAGAGGGTGCGACGGCTTGCTTGGCTGATTTGAA ACAGAGTGTTTTCGAGACCGTGACAAGTATGCATAATTCGAAATCCGAAGCAACGGTGGTTAGAGGGAGAATGACGGAGCTTGATGCCGACTTGGGTCGT GGACAGTTGCACCTTAGCTTGCTTGACGCTGAAATGTCTTTGATTTCGGCAGAGGAGGAGGACATTGATGCTGAGATTCAGCGATTGTTGAAGAAGAAGA AAGAGTTGCTGCTGGTCGACTAA
AA sequence Show only first row Show all	>Lus10012028 pacid=23161410 polypeptide=Lus10012028 locus=Lus10012028.g ID=Lus10012028.BGIv1.0 annot-version=v1.0 MQLLVNLKSLDVNHSGLLQIPDLSKAQKLHSLNLEGCLNLVGVSSIQHLTNLQNLNLKRSSGDASLDPQLTEEPVQVDPAVDSPSQELPLDLSDIWRKNS VESDDVKAFMTTPLIDFLHSGARIRELLAPNMDYYSNACSSSSEHVDSPARNNVDNDDHEKHEDSEIRKNKRPHELSKGSEEISLLLKKIRTSYNNNEAD TGLPWHSVESLEEYLSSLLEDLGNANVGSSNLENILHAVMELYSCSSDHYDKATAAEGATACLADLKQSVFETVTSMHNSKSEATVVRGRMTELDADLGR GQLHLSLLDAEMSLISAEEEDIDAEIQRLLKKKKELLLVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51630			Disease resistance protein (TI...		Lus10012028 [exp]	0	1
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	1.4	0.8104
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	2.8	0.8107
					Lus10009375 [exp]	6.5	0.7215
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	10.5	0.7863
AT4G30780			unknown protein		Lus10035819 [exp]	11.7	0.7936
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	17.8	0.7846
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	23.8	0.7988
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	24.5	0.7390
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	25.7	0.7606
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	27.0	0.7795

Compare expression of checked genes

Lus10012028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.