Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26170 101 / 5e-25 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT1G13960 107 / 6e-25 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G03340 106 / 2e-24 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT5G07100 100 / 2e-24 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT3G01080 102 / 2e-23 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT5G13080 96 / 3e-23 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT4G26640 102 / 4e-23 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT4G18170 100 / 4e-23 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G46350 99 / 6e-23 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT5G49520 100 / 8e-23 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016282 [exp] 374 / 2e-118 AT4G12020 142 / 3e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012030 [exp] 368 / 3e-116 AT4G12020 141 / 6e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012027 [exp] 269 / 6e-81 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10036624 [exp] 113 / 6e-29 AT5G26170 125 / 2e-36 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10035841 [exp] 109 / 2e-27 AT5G64810 131 / 4e-38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Lus10037131 [exp] 110 / 3e-26 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10026409 [exp] 104 / 9e-26 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10000173 [exp] 107 / 1e-25 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 108 / 2e-25 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163000 [exp] 111 / 4e-26 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.004G120800 [exp] 110 / 9e-26 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.011G087900 [exp] 108 / 4e-25 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.008G091900 [exp] 106 / 1e-24 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 106 / 2e-24 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G086000 [exp] 105 / 5e-24 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 105 / 7e-24 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.015G099200 [exp] 98 / 7e-24 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.006G224100 [exp] 97 / 9e-24 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.005G085200 [exp] 99 / 1e-23 AT5G64810 145 / 4e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012029 pacid=23161474 polypeptide=Lus10012029 locus=Lus10012029.g ID=Lus10012029.BGIv1.0 annot-version=v1.0 ATGTCAAAGCCAGCTGACTGCCCTGAACAACCTAGTCTCCCCTGGGACTTGGTTGATGAGGATTTTGTGCCACAAGATGATGATGCTCTTGCAGAAAGTC TCGGGATACTAAGGGATTTTGATAATACCGCAGCAGGAAAGAGTAAGCATGTTTTTTTCCGAACCAAGAGTGAGGTTGATTTAATTGATGATGGTTTTCG CTGGAAAAAGTATGGTCAGAAAAATTTGAAAGGAACTCCTTACCCGAGGAGTTATTACCGGTGCCCATATGTAGGATGCACAGTTAGGAAGCATGTGGAG AGGGATTCATTGAATCCTATATTTGTTCTGACCACTTATAACGGGGTGCACAACCATGGAACTGCAACGCCTGGAGAAAAGGCTATCAGTCATGGCACTA CAAAGCCACGTAGTATCCATGACTCCAGTATTGAATCAGATAATTGTCACGCAACTAACCTTGATTGTGAAAGTGACTCAAACCTTATGATTAGGCAATT GAAGATTGGTTCATCTCAAAGTGACTATACAAGGGCTTACTACAGGTGCACACATCCTGGATGTCCTGCTAGAAAGACCTTGCAGAGGGATTTAGATGAC CCTGAATTTCTTATAACGGAAGTTCAAAATGCTCACAGCCATGCTGCTGTAGCTCCTACAAAAGGGAAGAGCAATAGTCTTGACACTGCAAGGCGATCAC GTTTTTCACCGGTTAGTGAATATCATGCAAGTAGATTAATTAACCTCGATCCAATCAGCAAGAGTTCTGCTGCTGGTACTAGACGCAAGGGAAATGTTTG CTCAATGTATACGAGTGACCCGTTAAGGTTTGGATCAGATAAGGGTCGCCTAATAAAAACAGCTAGCCCTGATGATGCTGGATTGGGTCTTTCTGCTAAC AATGGTTATAGCTCCTTTTCTAATCCTTCTTTTGTAAGTGGGTACGGGAACAATAATGAGACATTACCTATGCTACGGAGTAAGACTGGATTTTACTACA GCGGCACAGCATCTATCATTGATTTTGGAGTTGAAACGAGTTTTACTGAGAAGGCTTTGCCTCCACCTGCGACTTACTCACTCATTAGTGGATCAGAGGA AAGCTACGCCATTAACCTTGATCTAGGGGCTGGGCTGAGTTCTTCTGCTGAAAATACATGTTACGGCAAGCAAGATGCAGAAAAGGTTGGAGGTAGAACC CTGGCCTTGGCTGAATCAAACCGGTTGCAATTCCAAAGTTCCATTTATATGGAAGAAGTGTACCTTTCGAGGTCTGCCTCTCCGTACTTGTGTGCACACA ACTTGATTTCAATCTTCTTGCCACGTTGCGAAGTTGAACATCTATGGAATGGAGGCGAGCAGGAAACAAGAAAGATTCCTTCTTGA
AA sequence Show only first row Show all	>Lus10012029 pacid=23161474 polypeptide=Lus10012029 locus=Lus10012029.g ID=Lus10012029.BGIv1.0 annot-version=v1.0 MSKPADCPEQPSLPWDLVDEDFVPQDDDALAESLGILRDFDNTAAGKSKHVFFRTKSEVDLIDDGFRWKKYGQKNLKGTPYPRSYYRCPYVGCTVRKHVE RDSLNPIFVLTTYNGVHNHGTATPGEKAISHGTTKPRSIHDSSIESDNCHATNLDCESDSNLMIRQLKIGSSQSDYTRAYYRCTHPGCPARKTLQRDLDD PEFLITEVQNAHSHAAVAPTKGKSNSLDTARRSRFSPVSEYHASRLINLDPISKSSAAGTRRKGNVCSMYTSDPLRFGSDKGRLIKTASPDDAGLGLSAN NGYSSFSNPSFVSGYGNNNETLPMLRSKTGFYYSGTASIIDFGVETSFTEKALPPPATYSLISGSEESYAINLDLGAGLSSSAENTCYGKQDAEKVGGRT LALAESNRLQFQSSIYMEEVYLSRSASPYLCAHNLISIFLPRCEVEHLWNGGEQETRKIPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10012029 [exp]	0	1
AT5G27260			unknown protein		Lus10006034 [exp]	2.2	0.6615
AT5G27260			unknown protein		Lus10010798 [exp]	7.2	0.6586
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	27.2	0.6185
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	29.3	0.6194
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10018264 [exp]	31.4	0.5530
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	34.5	0.5661
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	35.6	0.6069
					Lus10000810 [exp]	39.6	0.5226
AT2G23770			protein kinase family protein ...		Lus10032735 [exp]	45.2	0.5487
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	46.0	0.5959

Compare expression of checked genes

Lus10012029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.