Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 141 / 4e-35 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26640 136 / 2e-33 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 134 / 9e-33 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 126 / 1e-32 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G04880 129 / 2e-31 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G37260 127 / 2e-31 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT3G01080 121 / 5e-29 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT5G26170 109 / 3e-27 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT2G30250 114 / 1e-26 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G26440 112 / 3e-25 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016282 [exp] 1956 / 0 AT4G12020 142 / 3e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012027 [exp] 523 / 6e-168 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012029 [exp] 371 / 5e-117 AT1G13960 108 / 4e-25 WRKY DNA-binding protein 4 (.1.2) Lus10029852 [exp] 252 / 5e-68 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10007455 [exp] 170 / 1e-43 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016595 [exp] 147 / 1e-36 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10001265 [exp] 143 / 1e-35 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10003769 [exp] 143 / 3e-35 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 139 / 3e-34 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091900 [exp] 150 / 5e-38 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 148 / 3e-37 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.011G087900 [exp] 142 / 3e-35 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 142 / 4e-35 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.016G128300 [exp] 140 / 2e-34 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 139 / 2e-34 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.002G221600 [exp] 133 / 2e-33 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2) Potri.013G153400 [exp] 135 / 1e-32 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 134 / 2e-32 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 132 / 8e-32 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012030 pacid=23161411 polypeptide=Lus10012030 locus=Lus10012030.g ID=Lus10012030.BGIv1.0 annot-version=v1.0 ATGGCTGATTCTGCAGTGCTTGGTCTGCTCAATGAAGATGATGTTGAAGATGTGGAAGATTTTGGTTTCCCCTCTGCAAGGGTTGATTCTACAGGGCATG GGGTACTGCAAGAAAAAGAAGATGATGATGATGATGGCACCCTGGCAGGAAGTCGGAGGTACTTCATCAACACGATGTCTGTTGTTTCTCGGAAAGCAGG AAAGTCTGATGTTTCTTTCAGAACCAAGAGTGAGGTTGATGTACTTGATGACGGTGTCCAGTGGCGCAAGTACGACCAAAAACATGTGAAGAGAAGTCCT CACCCGAGGAGTTACTACCAGTGCGCATATGCAGGATGTACAGTTGTAAAGTCTGTGCAGAGGGATTCAGATGATCCTGCATTTGTTATTACTACTTATA AAGGTGAACATAACCATGATGTTGTAACACCTAGTGCAAAGATACTTGATCATCATGGCACTACAGGGCCACCGACTACTGGTGACTCATTCAGTACTGG ATCAAATTATAGTGGCATAAGTAGCCTTGATAACAGTGGTGTGCGAAACCTTTTGAGTGACTCGTCGAGGATTGTTTCAACTACAAGTGGAAGTGCAATA GAAGAGGAAGAGCACGGTAATAATGTTCTGTTCCCTTCATTGTACAGGGAGAAGGATATTACTTCCCAAACCAAGGTTAAGGATAATGATGGCTATCATT GGCGCAAGTATCACCAGAAAGTTATCAAGGGAAATGCTTATCCCAGGAGCTACTATAGGTGCACATATGTAGGTTGCTCAGCTAAAAAGCATGTGGAGAG GGACTTAGATAATCCGGACTATGTTATTACCTCTTATAAAGGAATACACAACCATGATTTTGCAATACCTAGAGCCAAGTGTATCAGTCATGTCCCTTTA GAGCCACTGACAATTGTTGACTCTTCTTGTGAGAAAAAAATAAAGACAATTGGTGACACTCTCTGTACCGGATCAGACAATAGTGGGTTAACTAGCGTTG ATCTCAGAGGTGCGGAAAACCGGAGGAGTGACTCTTCGAGGATTGGCTCATCAAAAGGTGACAGTATAGTTGAAGAGGAAGGACATGGTAATAATGATAA ATTCCGCAAATGTAAAAGGGAGAAGAGAAAAGTTATTACTCTCCGAACCAAGAGTAAGGTTGATTTAGTAGATGATGGTTACCGTTGGCGCAAGTATGGC CAAAAAGCGGTGTCAGGAAGTGCTTATTGGAGGGGCTACTACAAGTGCACACGTACAGCATGTCCTGCTAGAAAGACTGTGTATAGGGATTCAGATGATC CGGAATTTGTTATAACGAAAGTTCAAAATGACCACAGCCATGCTGCTGTAAATGCTCCTGACGCTGCAGTGCGACCAGCTTTTTCATTGGGTGGTGAGTA CGAAACTAGTAGCTTCATGAGCCTCGATCTTGGAATCGGTAAGAGCTCCACTGCTGAAACTAGACACGAGGGAAACGTCAACGTGATGAAAACTGATGAT ATTAAATTCGGGGTGGAGTTTTCTGCTAATGATGGTTGTAGCTCTTTTGATAATCCTTTTACTGAAAGTGGGTACTGGAACAATGACGAGTCTATGCTAT GGAGCCCATTTGAGACTGGATTTGACTACATTGGCACGGCACCCATCATTGATTACGGAGTTGAAACGAGTGTTGCTGAGAAGCCTATGCCTCAACCACC TTCGAGTTATTCACTAAGGAGTGGATCAGCGGAAAGTGGTGCCATTATCCTCGACCTAGGAGTTGGGTTGAGTTCTTCTGCTGAAACTACATGTAATGGC AGGCAAGAAGCAGAAAAGGTTGAAGGTAGAAGTACGCTGGCCGTGGCTGAATCAAAGTGGTTGCAGTTCCAAAAGAGAGATATTTATATGGAAGAGGTAT ACCTTTCGAGGTCTCCCTCGCCATCGTACTTATGTGCACACAACTTGAAGTCAATCTTCTTACCACGTTGTGAAGTTGAACATCTATGGAATGGAGGAGA GCAGCTTTTGGTGAATCTGAAGTCTCTAGATGTAAACCATTCCGGTCTGCTTCAGATTCCGGACCTGTCAAAAGCTCAGAAACTCGAGAGCTTGATCCTC GAGGGCTGCTTAAACTTGGTCAGCGTCTCTTCTGTTCACCATCTCGCCAACCTTCAAAATCTCAACCTCAAGCGCTGTCGGAGTCTTAAGGGGCTTCCCA GTCTGGTCAAGTTGAAGCTCCTCAAAACTCTCAATCTATCTCACTGCTCTAATCTCAGGAGACTTCCTCCATCACTTGGTTGCCTTTCCAGCCTTTGTGA ACTCAATCTTAGAAACTGTGCAAAACTTGACTATCTCCCGCAAGGTGTCGTGAAGTTGATGAGATCTCTTGAAACTCTAAATGTTTCCGGCTGCTCAAGT CTTTGGAAATCGATCGGTGCAGATGACAATGCAGCATTGTCTTTCCCCCTGGAGAATCTACCTAGTACCAGTAGGATTTCCATGAACCACTCTTTTGAAG ATGTTAATCTCGAACCACAACCAGTCGAAACTGTGCAAGTCGATGCTGCAGGCAAATGTGCAAGTATCGAAGATTCACCACCGCAAGAACTTCCATTGGA TTTGAGCGATATATGGAGAAAGAAACCTTTGGAATCGGATGATGTTGCTGCTTTTATGACCACTCCGTTGATTGATTTGTTACCTTCGGGATCCAGGATT AGGGAGTGGTTGCTTCCTAATATGGATTCTTCTTCCAATGCTTGCTCTTCTCCTCCAGAAGACACCGCTTTCCATGCCCGAAACAGTATACGAAACGAGG GATCGGACGATGAGAAGGGTATGATGGAGGCTGTTCGAGAGAAGGACGATCAACAACAACTTGTTGGCAATGTCAAACATGAAGATGATCCAGAGAGTGT AGGAAAGAGTCCGCAGATCGTTGGGTCCGAATTTGTTTGCCATCAAGTGGAAGATTATGATGTTAATCCGAGAAGCGAGAAGGATGGTTCAACTTTGGTG GGGAAGGTTATGCAGCGATTTTGTCAGCAATGTTCAAAGTACCATGTCCTTGGAGAATTCGACGAAAAGGAAAGCACCTGCTTAAGGAATAAGAGGCCGA ATGAATGTTCAATCGACACGGCTGAATCCGAGGAGAAACACATGGTGGTGCTAAAGAGAACAAGAACGAGTTATGACGACACTGGCAGGACTGATCTTGC TTTGCATTCGCTTGAATTGTTTGAAGAGTATCTAACCATGTCGTTGAAAGATCTCGAAAATGCAAATGCACTCAGCAACATCGAGAGTGCTCTCTGTGCC ATGATCGAACACTACTCTTCTTCAAGCTCAAATCTCTACGATAAGGCAACAGTGGAAAGCATGTTGGCTGAGTTGAAACAGAGTGTCGTCGAGCCTGTGT CTAGCATGCAGAAGGCAAAGTCTGAGTCAGCCGTTGTTGCAGGGAAAATGACGGAGCTTGATACTGACTTGGGTCATGGACAGTTGCACCTTAGCTTGCT TGACGCTGAAATGTCGTTGATCTTGGAGGAGGAAGAGAACATTGAGGCTGAGATTCAGCGCCTGATGGAGAAGAAGGGAGAGTTCTTGCTGGTCTAA
AA sequence Show only first row Show all	>Lus10012030 pacid=23161411 polypeptide=Lus10012030 locus=Lus10012030.g ID=Lus10012030.BGIv1.0 annot-version=v1.0 MADSAVLGLLNEDDVEDVEDFGFPSARVDSTGHGVLQEKEDDDDDGTLAGSRRYFINTMSVVSRKAGKSDVSFRTKSEVDVLDDGVQWRKYDQKHVKRSP HPRSYYQCAYAGCTVVKSVQRDSDDPAFVITTYKGEHNHDVVTPSAKILDHHGTTGPPTTGDSFSTGSNYSGISSLDNSGVRNLLSDSSRIVSTTSGSAI EEEEHGNNVLFPSLYREKDITSQTKVKDNDGYHWRKYHQKVIKGNAYPRSYYRCTYVGCSAKKHVERDLDNPDYVITSYKGIHNHDFAIPRAKCISHVPL EPLTIVDSSCEKKIKTIGDTLCTGSDNSGLTSVDLRGAENRRSDSSRIGSSKGDSIVEEEGHGNNDKFRKCKREKRKVITLRTKSKVDLVDDGYRWRKYG QKAVSGSAYWRGYYKCTRTACPARKTVYRDSDDPEFVITKVQNDHSHAAVNAPDAAVRPAFSLGGEYETSSFMSLDLGIGKSSTAETRHEGNVNVMKTDD IKFGVEFSANDGCSSFDNPFTESGYWNNDESMLWSPFETGFDYIGTAPIIDYGVETSVAEKPMPQPPSSYSLRSGSAESGAIILDLGVGLSSSAETTCNG RQEAEKVEGRSTLAVAESKWLQFQKRDIYMEEVYLSRSPSPSYLCAHNLKSIFLPRCEVEHLWNGGEQLLVNLKSLDVNHSGLLQIPDLSKAQKLESLIL EGCLNLVSVSSVHHLANLQNLNLKRCRSLKGLPSLVKLKLLKTLNLSHCSNLRRLPPSLGCLSSLCELNLRNCAKLDYLPQGVVKLMRSLETLNVSGCSS LWKSIGADDNAALSFPLENLPSTSRISMNHSFEDVNLEPQPVETVQVDAAGKCASIEDSPPQELPLDLSDIWRKKPLESDDVAAFMTTPLIDLLPSGSRI REWLLPNMDSSSNACSSPPEDTAFHARNSIRNEGSDDEKGMMEAVREKDDQQQLVGNVKHEDDPESVGKSPQIVGSEFVCHQVEDYDVNPRSEKDGSTLV GKVMQRFCQQCSKYHVLGEFDEKESTCLRNKRPNECSIDTAESEEKHMVVLKRTRTSYDDTGRTDLALHSLELFEEYLTMSLKDLENANALSNIESALCA MIEHYSSSSSNLYDKATVESMLAELKQSVVEPVSSMQKAKSESAVVAGKMTELDTDLGHGQLHLSLLDAEMSLILEEEENIEAEIQRLMEKKGEFLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	0	1
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	1.0	0.8963
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	2.8	0.8748
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	5.9	0.8342
AT4G12010			Disease resistance protein (TI...		Lus10023051 [exp]	10.2	0.8154
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	13.7	0.8324
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	15.5	0.8220
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	18.4	0.8024
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	19.3	0.8058
AT5G16110			unknown protein		Lus10028474 [exp]	20.9	0.8350
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	22.2	0.8593

Compare expression of checked genes

Lus10012030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.