Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 367 / 7e-131 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 342 / 7e-121 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT4G39990 309 / 1e-107 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT5G65270 306 / 2e-106 AtRABA4a RAB GTPase homolog A4A (.1) AT1G09630 266 / 7e-91 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT5G60860 263 / 1e-89 AtRABA1f RAB GTPase homolog A1F (.1) AT1G07410 262 / 2e-89 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT4G18430 262 / 3e-89 AtRABA1e RAB GTPase homolog A1E (.1) AT1G28550 259 / 4e-88 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 259 / 4e-88 ArRABA1h RAB GTPase homolog A1H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016284 [exp] 416 / 4e-150 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 358 / 5e-125 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 361 / 2e-123 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10035924 [exp] 317 / 9e-111 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 316 / 2e-110 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 313 / 2e-109 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10014732 [exp] 312 / 9e-109 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10023153 [exp] 311 / 1e-108 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10002725 [exp] 308 / 2e-107 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050400 [exp] 364 / 1e-129 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 359 / 1e-127 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.001G270100 [exp] 342 / 6e-121 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 329 / 1e-115 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 319 / 9e-112 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.003G004100 [exp] 266 / 4e-91 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 266 / 4e-91 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 264 / 4e-90 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.019G092500 [exp] 264 / 4e-90 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.014G102200 [exp] 263 / 2e-89 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10012032 pacid=23161498 polypeptide=Lus10012032 locus=Lus10012032.g ID=Lus10012032.BGIv1.0 annot-version=v1.0 ATGTCGAATTATGTTGATTTCAATCAGAAGATAGATTACGTGTTCAAGGTGGTGCTGATCGGAGATTCCGCGGTGGGGAAATCGCAGCTGCTGGCGCGGT TCTCGAGGAACGAGTTCAGTGTCGATTCGAAAGCGACAATCGGAGTCGAGTTCCAAACGAAGACGCTTAGTATCGATGACAAGACCGTTAAAGCCCAGAT TTGGGACACCGCCGGCCAAGAAAGGTACAGAGCAGTAACGAGCGCGTACTACAGGGGAGCAGTAGGGGCAATGTTGGTCTACGACATGAGCAAGCGTCAA TCCTTCGACCACATGTCGCGGTGGCTCGACGAGCTCCGCAACCACGCCGACAAGAACATCGTCATCATGCTCATCGGCAACAAGTGCGATCTGGAAAGCC TGCGCGCCGTTCCTCAGGAGGACGCGCAGGAGTTCGCCCAGCGGGAGAACCTCTTCTTCATGGAGACCTCCGCGTTGGACTCCACCAATGTTGAGACCAC GTTCTTGACCGTGTTGTCCGAGATCTACAGGATCGTCGGGAAGAAGACGCTCGCTGCGAACTACGACGAGCTGGACCCTGGCTCGAATCTGTTGAAAGGG ACGAGGATCATCGTCCCCGGCGGTGAGAATGGGGACGGGCGGCGGGGCGGGTGTTGTGCATGA
AA sequence Show only first row Show all	>Lus10012032 pacid=23161498 polypeptide=Lus10012032 locus=Lus10012032.g ID=Lus10012032.BGIv1.0 annot-version=v1.0 MSNYVDFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSVDSKATIGVEFQTKTLSIDDKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMSKRQ SFDHMSRWLDELRNHADKNIVIMLIGNKCDLESLRAVPQEDAQEFAQRENLFFMETSALDSTNVETTFLTVLSEIYRIVGKKTLAANYDELDPGSNLLKG TRIIVPGGENGDGRRGGCCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	0	1
					Lus10010827 [exp]	3.2	0.9688
					Lus10010526 [exp]	4.2	0.9664
AT4G32060			calcium-binding EF hand family...		Lus10040000 [exp]	4.2	0.8430
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	4.5	0.9688
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015093 [exp]	4.9	0.9405
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	5.1	0.9197
					Lus10005843 [exp]	5.5	0.9688
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10015095 [exp]	5.6	0.6721
					Lus10022511 [exp]	6.3	0.9688
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	7.1	0.9688

Compare expression of checked genes

Lus10012032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.