Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18930 121 / 2e-30 RING/U-box superfamily protein (.1.2) AT5G43420 76 / 9e-15 RING/U-box superfamily protein (.1) AT4G30400 75 / 2e-14 RING/U-box superfamily protein (.1) AT2G18650 74 / 3e-14 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT3G16720 73 / 4e-14 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G04360 73 / 5e-14 RING/U-box superfamily protein (.1) AT1G23980 73 / 7e-14 RING/U-box superfamily protein (.1) AT2G27940 71 / 8e-14 RING/U-box superfamily protein (.1) AT3G03550 72 / 1e-13 RING/U-box superfamily protein (.1) AT5G17600 71 / 2e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029456 [exp] 72 / 2e-15 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10012745 [exp] 76 / 6e-15 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10019973 [exp] 76 / 1e-14 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10005954 [exp] 74 / 3e-14 AT3G04020 111 / 7e-28 unknown protein Lus10013618 [exp] 74 / 3e-14 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10015502 [exp] 74 / 6e-14 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10016163 [exp] 71 / 8e-14 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10000710 [exp] 72 / 9e-14 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10015901 [exp] 72 / 1e-13 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G110000 [exp] 150 / 6e-41 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.002G039700 [exp] 77 / 2e-15 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 74 / 2e-15 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 76 / 4e-15 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 76 / 5e-15 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 72 / 7e-15 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 73 / 9e-15 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 75 / 1e-14 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 74 / 2e-14 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 74 / 3e-14 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012033 pacid=23161454 polypeptide=Lus10012033 locus=Lus10012033.g ID=Lus10012033.BGIv1.0 annot-version=v1.0 ATGACGATGCTCGGCAGCAGATCCACCGCCTCCCCTTCCCCTGCTCCGTCCCCTTCACCTCTCACTCACCACCACCACCACAACAACCACCATAGGTTCC ACATCCACCAACCTCCGCTAGACTCAGGAGCTTCTTCATCATCGCTACCGTCTACTCGCCCCATCCCCCCCCCCCGCCCCCCTCCCCCACTCGAACCATC CCCCCCGCTGATCGCGATGGTGGTCGTGGTAGCCACTGCTCTGCTTGTTATCACCTACTCCCGCCTGATCTCCCGATCCCTCATTATGCTCCTCCGTCGC TACCGCCGCCGACGCAGCCGGCGCCACTTTCCGAATTCCGCTCCGTCGTCAACCGGAGGCGGCGATCGATTCGACTCTCCTCTGCCTTTCTTCGACTCCC CTGACGAATTCCACCACCTCTACTATCCTAACTACGGCCTTGACGAGTCGTCGCCTGCGGCGACCAGAGATTGCGCCGTCTGCTTGCTGGAGTTCGAACA CGGCCGAGACTACGTCCGCACTCTCCCGAACTGCTCGCACGCGTTCCACGTGGACTGCATCGACATCTGGCTTAGGTCTCACGCCAACTGTCCACTCTGC CGCTCCCGGATCTTCCTCCCATCATCCCCTCCTCCGCCGTTCGTCCCGCTTATGGCGGCTCGAATCCGCCCCAGCTTTGTCGAGAATCCGAATTTCCTCC TCCCGGATCCCGAGTTCCAGCCCTCCGTGATCCGAGAATCCTCCGAAATCACTCCCTGCGTCGAAGAGGATGAGGAAAGAATCAACGATTTCGGCCTGGA CAGCAGCATTAGCAGGAGGAACAACAACTTCAACAACCTCCTCAAGCGGTCCTACTCGTTCGGATTCGAGCGGTCCGAGAGAATGACGCTGGCGACTGAG CCAGCTACGGTGTCTCCCTGGCGATCGAGCAGGAGATCGACGTCGTCGAGCAAACGGCCGTCTCCGTTCGGATCGTATCTGTCGAAGCCTAGACTGTTCT CGTCGTTCAGGTACTACTACAAGTCCCCCTTCTCCAGACGAAGATCAGTATGCGGAAGCGGCGCAGGAGGAGGAACATCAGGAGGAGGAGGATTCTTCCC TCTCTCGGAGAGATACGGCAGCGGCGGATACTCGAGGCGGAGTAAGTCGGGGGAGGTTTTTGATTGGATATCGCCAGGTGGATTGCCGGAGAGCGGTGGT TTTGGGATTTTTGGGTTTTTTTTGGGGGAAGAGAGAAATGGAGGCATTAAATAG
AA sequence Show only first row Show all	>Lus10012033 pacid=23161454 polypeptide=Lus10012033 locus=Lus10012033.g ID=Lus10012033.BGIv1.0 annot-version=v1.0 MTMLGSRSTASPSPAPSPSPLTHHHHHNNHHRFHIHQPPLDSGASSSSLPSTRPIPPPRPPPPLEPSPPLIAMVVVVATALLVITYSRLISRSLIMLLRR YRRRRSRRHFPNSAPSSTGGGDRFDSPLPFFDSPDEFHHLYYPNYGLDESSPAATRDCAVCLLEFEHGRDYVRTLPNCSHAFHVDCIDIWLRSHANCPLC RSRIFLPSSPPPPFVPLMAARIRPSFVENPNFLLPDPEFQPSVIRESSEITPCVEEDEERINDFGLDSSISRRNNNFNNLLKRSYSFGFERSERMTLATE PATVSPWRSSRRSTSSSKRPSPFGSYLSKPRLFSSFRYYYKSPFSRRRSVCGSGAGGGTSGGGGFFPLSERYGSGGYSRRSKSGEVFDWISPGGLPESGG FGIFGFFLGEERNGGIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	0	1
AT4G29780			unknown protein		Lus10011946 [exp]	4.0	0.9316
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10004964 [exp]	6.5	0.8911
AT4G29780			unknown protein		Lus10027622 [exp]	7.1	0.9150
AT3G21570			unknown protein		Lus10012773 [exp]	8.1	0.8936
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	8.5	0.8948
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	8.7	0.9143
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	9.7	0.9048
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	10.7	0.9149
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	14.1	0.9048
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	15.0	0.9039

Compare expression of checked genes

Lus10012033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.