Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50830 217 / 3e-72 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 216 / 7e-72 Cold acclimation protein WCOR413 family (.1) AT2G15970 197 / 3e-64 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 111 / 7e-31 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 58 / 1e-10 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 51 / 6e-08 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027946 [exp] 355 / 7e-127 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 332 / 2e-117 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 324 / 2e-114 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10021020 [exp] 262 / 1e-89 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 203 / 1e-66 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10023833 [exp] 172 / 9e-55 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10015258 [exp] 48 / 8e-07 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10025378 [exp] 48 / 9e-07 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 44 / 3e-05 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109800 [exp] 259 / 1e-88 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 233 / 2e-78 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 221 / 1e-73 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 60 / 4e-11 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1) Potri.001G353500 [exp] 45 / 1e-05 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10012034 pacid=23161433 polypeptide=Lus10012034 locus=Lus10012034.g ID=Lus10012034.BGIv1.0 annot-version=v1.0 ATGGCGAGACAGAGCTACTTAGCTATGAAGATCGACGGAGCAAGCACCGCACTGATCGCTTCCGATTTCAACGACCTAACCGCCGCAGCGAAGAACTTAG CAATCCACGTCGGAGCCGTTGCCGGATTCGGAACCTCCCTGTTCCAGTGGCTCGCTGCAATCTCCGCCATATATCTACTGATACTGGATCGGACGAATTG GAAGACCAACATTCTGACGGGGTTACTCATCCCTTACATCTTCTTCACCTTGCCTCATTTCCTCTTCAGTTTCCTCCGAGGGGAAGTTGGGAAATGGGTT GCGCTTGTTGCTGTTGTGCTTCGCTTGTTCTTCCCCAGCCGATTCCCCGATTGGCTAGAGATGCCAGCATCATTGATCCTGCTAATAGTGGTGGCTCCAG AGTTGATCGCCGGCTACGTGAAAGGGAACTGGATTGGAATAGCAATATGCCTCGGGATAGCCTGCTACTTGCTGCAAGAACACATCAGAGCCTCCGGCGG GTTCAGGAACGCCTTCACCAGAGAAGCAGGAATCTCCAACACCATCGGAATTGTTCTCCTCTTTGTTTACCCTGCCTACTTTTTCATTAGAAATACTCTC TGA
AA sequence Show only first row Show all	>Lus10012034 pacid=23161433 polypeptide=Lus10012034 locus=Lus10012034.g ID=Lus10012034.BGIv1.0 annot-version=v1.0 MARQSYLAMKIDGASTALIASDFNDLTAAAKNLAIHVGAVAGFGTSLFQWLAAISAIYLLILDRTNWKTNILTGLLIPYIFFTLPHFLFSFLRGEVGKWV ALVAVVLRLFFPSRFPDWLEMPASLILLIVVAPELIAGYVKGNWIGIAICLGIACYLLQEHIRASGGFRNAFTREAGISNTIGIVLLFVYPAYFFIRNTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	0	1
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	2.8	0.9030
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	5.7	0.8961
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	8.5	0.8854
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	10.2	0.8513
AT3G27210			unknown protein		Lus10035217 [exp]	11.5	0.8529
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	11.8	0.8406
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	11.8	0.8740
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	12.2	0.8718
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	12.5	0.8442
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	14.8	0.8592

Compare expression of checked genes

Lus10012034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.