Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37220 224 / 4e-75 Cold acclimation protein WCOR413 family (.1) AT3G50830 222 / 3e-74 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT2G15970 215 / 2e-71 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 125 / 4e-36 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 62 / 4e-12 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 59 / 1e-10 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027945 [exp] 368 / 7e-132 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10027946 [exp] 339 / 2e-120 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10012034 [exp] 336 / 4e-119 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10021020 [exp] 270 / 7e-93 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 204 / 7e-67 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10023833 [exp] 178 / 3e-57 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10025378 [exp] 54 / 1e-08 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 54 / 1e-08 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 51 / 1e-07 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109800 [exp] 259 / 1e-88 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 240 / 2e-81 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 225 / 2e-75 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 66 / 1e-13 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1) Potri.001G353500 [exp] 41 / 0.0002 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10012035 pacid=23161423 polypeptide=Lus10012035 locus=Lus10012035.g ID=Lus10012035.BGIv1.0 annot-version=v1.0 ATGGCGAAACAGAGCTACTTAGCGATGAAGATCGACGGAGCAAGCAACGCACTGATCGCTTCAGATTTCAACGAGCTAGCCACTGCAGCGAAGAACTTGG CAATCCACGTCGGAGCCGTCGCCGGATTCGGCACCTCCCTGTTCCAGTGGCTCGCTGCAATCTCCGCCATATATCTACTGATACTGGATCGGACGAATTG GAAGACTAACATTCTCACAGGGTTACTCATCCCTTACATCTTCTTCACCTTGCCTCAGTTCCTCTTCGGTTTCCTCCGAGGGGAGATTGGGAAATGGGCT GCGCTCGTCGCTATTGTGGTTCGCCTGTTCTTCCCCAGCCAATTCGCAGAATGGCTAGAGATGCCGGCTTCGTCGATCCTGCTAATAGTGGTGGCGCCAG AGTTGATTGCCGGCTACGCTAGAGGGAACTGGATCGGAGTAGCGATATGCCTCGGAATCGCCTGCTACTTGCTGCAAGAACACATCAGAGCCTCCGGCGG GTTCAAGAACGCCTTCACCAAAGAAGCAGGAATCTCCAACACCATCGGAATTTGTCTCCTCTTTGTTTACCCTGCCTACTCTTTGATCAGAAGCATTCTC TGA
AA sequence Show only first row Show all	>Lus10012035 pacid=23161423 polypeptide=Lus10012035 locus=Lus10012035.g ID=Lus10012035.BGIv1.0 annot-version=v1.0 MAKQSYLAMKIDGASNALIASDFNELATAAKNLAIHVGAVAGFGTSLFQWLAAISAIYLLILDRTNWKTNILTGLLIPYIFFTLPQFLFGFLRGEIGKWA ALVAIVVRLFFPSQFAEWLEMPASSILLIVVAPELIAGYARGNWIGVAICLGIACYLLQEHIRASGGFKNAFTKEAGISNTIGICLLFVYPAYSLIRSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	0	1
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	1.0	0.9087
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	3.2	0.8657
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10019890 [exp]	5.9	0.8241
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	9.2	0.8584
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	9.7	0.8279
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	10.4	0.8309
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10016445 [exp]	15.5	0.8227
AT3G52740			unknown protein		Lus10022717 [exp]	16.4	0.8002
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	17.3	0.7964
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	20.0	0.8022

Compare expression of checked genes

Lus10012035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.