Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18950 442 / 2e-152 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 425 / 1e-145 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 415 / 2e-141 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 399 / 1e-135 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 387 / 7e-131 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 370 / 5e-126 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 214 / 1e-64 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 209 / 2e-62 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 207 / 5e-62 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 199 / 7e-59 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027944 [exp] 647 / 0 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 446 / 5e-154 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 437 / 3e-149 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 401 / 6e-137 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 401 / 8e-137 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 400 / 3e-136 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 384 / 4e-130 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 293 / 6e-93 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 213 / 4e-64 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109500 [exp] 499 / 5e-175 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 494 / 8e-173 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 404 / 4e-137 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 404 / 1e-136 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 398 / 6e-135 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 392 / 6e-133 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 227 / 2e-69 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 224 / 2e-68 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 214 / 1e-63 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 206 / 2e-61 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10012036 pacid=23161391 polypeptide=Lus10012036 locus=Lus10012036.g ID=Lus10012036.BGIv1.0 annot-version=v1.0 ATGAGGTACGAAAAGTCACAAGATCCGCCTCCGGCGACGACGTCGACGAACACTAATCCCCCTAATCGCCGGCTCAAGCTCGGTGCACTCCTGCTCCACG AAGACGCCGAGCTTAATCGTGACATCGCGACCGCTTCCTCAAGCTTGACTAGCACTCCGAGGGACTCGAACAGTAGCGGAACTCCCGCCGCCGCCGACCT TCTATTCGCTTCTTCTCCTTTCTACGGCGGGGGACTACTATCTCCATGGAACAACAGCAACAACAACAATCCGACGCTATCGCCGTACTTGAAATCGCCC TGGATAATCCCTTCCCCTGCTCTTCTTCCAAACAACAGCTTAATCGGATCGATTGTGCGGCAGGAAGGCCACGTCTACTCTCTGGCCGCGTCTGGAGATC TGCTCTACACCGGATCTGACAGCAAGAACATCCGAGTGTGGAAGAACTTGAAGGAGTTCGCCGGATTTAAGTCGAACAGCGGGCTCGTGAAGGCGATTGT AATCCACGGCGATAAGGTTTTCACCGGTCACCAGGACGGGAAAATCCGGATCTGGAAGGTCTCGTCGAGGAACTCGTCTTCCTACGGAAGGGTAGGGAGC TTGCCGACGTTCAAGGATTCGCTTACGAGCTCCGTAAATCCGAAGAACTACGTCCAGATTCGGCGACGGAAGAACGTTTTGAAAATCAAGCATTACGATG CTGTTTCGTGTATGGCGCTGAATCCAGATCTCGGCCTTCTCTACTCCGGGTCCTGGGACAAGACTCTCAAGGTATGGCGAATCGGAGACGGTAAAAGCAA CGGTAGCAGTGCTTCTAATTACAAGTGTTTGGAGTCGATAAACGCGCACGACGACGCGATAAACGCGGTGGCGACGGGATTCGATTCTCTCGTGTTCACC GGATCCGCGGACGGGACGGTGAAGGTGTGGAAGCGGGAGCTGGAATCGAAAGGAAACGTTAAGCATTTCTTAGTCCAGACGCTGCTGGAGCAGGAGAGCG CGGTGACGGCGTTGGCGGTGAGCAGCGGCGGAGGAGGAGGCGACGTCGGATCAGAAGTGGGGACACAAGATGGCGGTTCCCGCGGCGGGGGGCTGAGGGA CAAAAAGGTGGGGGTGCTCTGCCGGGCCACGGCGGGGGAAGGGTTGGTTTTCAGCGGGTCCGCCGATAAGAGCATCTGCGTGTGGAGGAAGGAGAGGGGT GGTGGTGGGGACCACGTCTGCCTTACGGTTTTGACGGGCCACGGTGGGCCCGTCAAGTGCTTGGCGGTTGGGAGATCGGACGGTGAGGAGAAAGCGAAGG GTGAGGAAGATCAACGGTGGGTGGTGTATAGCGGGAGTCTTGATCGGTCGGTGAAGATTTGGCGCGTGGATGACCACGTTCCGGAGTGGCGGGATTATTA CCAGTCGCCTAGATTGAGCCCTTATGACCGTTCTCCCAGACAGTGA
AA sequence Show only first row Show all	>Lus10012036 pacid=23161391 polypeptide=Lus10012036 locus=Lus10012036.g ID=Lus10012036.BGIv1.0 annot-version=v1.0 MRYEKSQDPPPATTSTNTNPPNRRLKLGALLLHEDAELNRDIATASSSLTSTPRDSNSSGTPAAADLLFASSPFYGGGLLSPWNNSNNNNPTLSPYLKSP WIIPSPALLPNNSLIGSIVRQEGHVYSLAASGDLLYTGSDSKNIRVWKNLKEFAGFKSNSGLVKAIVIHGDKVFTGHQDGKIRIWKVSSRNSSSYGRVGS LPTFKDSLTSSVNPKNYVQIRRRKNVLKIKHYDAVSCMALNPDLGLLYSGSWDKTLKVWRIGDGKSNGSSASNYKCLESINAHDDAINAVATGFDSLVFT GSADGTVKVWKRELESKGNVKHFLVQTLLEQESAVTALAVSSGGGGGDVGSEVGTQDGGSRGGGLRDKKVGVLCRATAGEGLVFSGSADKSICVWRKERG GGGDHVCLTVLTGHGGPVKCLAVGRSDGEEKAKGEEDQRWVVYSGSLDRSVKIWRVDDHVPEWRDYYQSPRLSPYDRSPRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	0	1
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	4.7	0.9082
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	5.2	0.8917
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	8.8	0.9002
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	10.3	0.8585
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	12.2	0.9311
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	12.2	0.8701
AT4G12070			unknown protein		Lus10031257 [exp]	12.4	0.8817
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039448 [exp]	13.7	0.8868
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	15.8	0.8883
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	21.2	0.8943

Compare expression of checked genes

Lus10012036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.