Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15630 653 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 315 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 292 / 9e-89 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 286 / 2e-86 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 289 / 3e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 284 / 4e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 273 / 9e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 271 / 4e-82 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 270 / 9e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 269 / 5e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007468 [exp] 297 / 7e-91 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 295 / 3e-89 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027914 [exp] 284 / 2e-85 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 286 / 8e-85 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 280 / 4e-84 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 273 / 1e-82 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036020 [exp] 275 / 2e-81 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 268 / 1e-79 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 264 / 3e-78 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147700 [exp] 843 / 0 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 326 / 1e-101 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 304 / 4e-93 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 291 / 3e-88 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.015G105400 [exp] 295 / 1e-87 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 285 / 1e-86 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 279 / 2e-85 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 280 / 3e-85 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 277 / 2e-84 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 276 / 4e-84 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012037 pacid=23161485 polypeptide=Lus10012037 locus=Lus10012037.g ID=Lus10012037.BGIv1.0 annot-version=v1.0 ATGAAGCCAAACAGACTGTTAAAAGCTCGATTCCTTAAACTCAATAGCTTCAAAACCTCCCCAGTTCAATCCAGACAGATCCCCGGTTATCCCAATTGCT GCCCGTTCTCCTCCGCGGCCGAAATCGACACAGGGAGTATTATTCCAGCGGAAGAAGAAGCTAGCGTGGAGAAGGCGGAAGAAGGAGGAGGAGGTGAGAT CTTCAAATTAATACAATCTTCTAAGTGGCATTCCGTCGAACACCTGGCGCGCAAACTGACATCTCCAGCTATTTCCACTACTCTACTTTCTCTTAAGAAG AAACCGGATTCAGCGCTCAGGTTCGTCAACTGTGTCGGATTTGACTCTCTCGATTTGAAAAATAAGTGTCTTTCCGTGGCAGCGGTGTCTCAGTCGCCTT CTCCGAAGCCCAGTTTGCAATTACTAAAGCAAACCATTAGGAATAATAATAGAGCGGCGGTGGTCGACGTTTTGGAAGTTTTTAACGAGTTGGCGATTGC TAAGGATGCGTTTGGGATCGAAAGTTCGTTACTTTTCGATTTGCTGATCAAGACTTGCTGCGAATTGAAAAGAGGCGAGGATGCGTTTGTCTGTTTCGAT GCAATGAAGGAGAAAGGTTTGAATCCAAAAGTCGAGACGTGTAATGAAATGCTGAATCTGTTTCTGAAATCGAATCGCACCGAGAAAGCTTGGGTTCTGT ATGCTGAAATGTTCAGGTTAAAGATCAAGTCGAGTGTTTACACTTTCAACATAATGCTTAACGTATTGTGCAAGGAAGGCAAGCTGAAGCAAGCCAAGGA GTTCATCCCGTTCATGGAGAGCTTAGGGATTAAGCCGACTGTTGTAACCTACAACACGTTAATTCACGGGTACTGCTCGAGAGGGAGGTATGAAGGTGCA CTTTTGATTTTTGATCTAATGCAGCGTAAAGGAATCGATCCTGATGCGTACACGTACGGTTCCCTCATTTCCGGGAAATGCAAGGAAGGAAATCTCGATG TTGCCTCTAAACTGCTCGAGAAAATGAAGGAAATCGGATTGGTTCCGAATGCTGTTACCTACAACATCTTGATTGATGGGTATTGCAATAAAGGCGATCT GGAGGTGGCGTTTCGGTATAAGGACGAGATGATTGGGAAGGGGATTGTGCCGACTGTGTCTACGTACAATCTGTTGGTTCATGCCTTGTTGATGGAGGCG AAAATGGACGAAGCTGATGAGATGGTGAAGGAAATGAAGGGTAAAGGGATAGTTCCTGATTTGATAACTTACAACATATTGATTAATGGTTATTCGAGAT GTAAGAATGTTAAGAAGGCGTTCGAGCTCCACGATGAGATGGTGAGTTTAGGCATTCAGCCGACGAAGGTAACTTATACGTCACTCATTTACGTTCTGAG TAAACGGAAAAGAATGAAGGAAGCTGATAACTTGTTCGACAAGATTCTGAGACAGGGGAGGATTCTTCCGGATCGGATAATGTTCAATGCTTTAATCGAC GGTCATTGTTCTAGCGGGAATATAGACCGTGGATTCGAATTGTTGGAAGAGATGGATAGAGTGAAGTGTTTGCCCGACGAGGTGACTTACAACACCCTGA TGCAGGGGCGGTGCAGGGAGGGGAAAGTCGAAGAGGCTCGTGGATTGATCGAGGAGATGAAGAACCAGGGGATTAAACCGGATCATATCAGTTACAATAC TCTGATTAGTGGTTACAGTAAGAGAGGGGATATGAAGGATGCGTTGAGGGTTCGGGATGAGATGGTGAGTATAGGGTTTAATCCGACAAGGTTAACATAT AATGCGCTGATCCAAGGGTTGTGTAAGAATCAAGAAGGGGATCTTGCTGAGGAGCTGTTTAGGGAAATGGCTAGCAGAGGGATTCCTCCAGATGATAGTA CTTACTTCTCTTTGATTGAAGGGATTGGGAAGGAAGTTGAGAGTTCAGAGTCAGTTCCATGA
AA sequence Show only first row Show all	>Lus10012037 pacid=23161485 polypeptide=Lus10012037 locus=Lus10012037.g ID=Lus10012037.BGIv1.0 annot-version=v1.0 MKPNRLLKARFLKLNSFKTSPVQSRQIPGYPNCCPFSSAAEIDTGSIIPAEEEASVEKAEEGGGGEIFKLIQSSKWHSVEHLARKLTSPAISTTLLSLKK KPDSALRFVNCVGFDSLDLKNKCLSVAAVSQSPSPKPSLQLLKQTIRNNNRAAVVDVLEVFNELAIAKDAFGIESSLLFDLLIKTCCELKRGEDAFVCFD AMKEKGLNPKVETCNEMLNLFLKSNRTEKAWVLYAEMFRLKIKSSVYTFNIMLNVLCKEGKLKQAKEFIPFMESLGIKPTVVTYNTLIHGYCSRGRYEGA LLIFDLMQRKGIDPDAYTYGSLISGKCKEGNLDVASKLLEKMKEIGLVPNAVTYNILIDGYCNKGDLEVAFRYKDEMIGKGIVPTVSTYNLLVHALLMEA KMDEADEMVKEMKGKGIVPDLITYNILINGYSRCKNVKKAFELHDEMVSLGIQPTKVTYTSLIYVLSKRKRMKEADNLFDKILRQGRILPDRIMFNALID GHCSSGNIDRGFELLEEMDRVKCLPDEVTYNTLMQGRCREGKVEEARGLIEEMKNQGIKPDHISYNTLISGYSKRGDMKDALRVRDEMVSIGFNPTRLTY NALIQGLCKNQEGDLAEELFREMASRGIPPDDSTYFSLIEGIGKEVESSESVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15630			Pentatricopeptide repeat (PPR)...		Lus10012037 [exp]	0	1
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	13.4	0.8240
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	14.2	0.8064
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	14.4	0.8183
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	17.5	0.8062
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039785 [exp]	29.4	0.7709
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	33.6	0.8006
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	35.7	0.7791
AT5G62440			Protein of unknown function (D...		Lus10002053 [exp]	38.2	0.7802
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	38.6	0.7854
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	41.1	0.7794

Compare expression of checked genes

Lus10012037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.