Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 64 / 4e-11 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 59 / 5e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 58 / 6e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 58 / 7e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 51 / 7e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 42 / 0.0003 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 42 / 0.0006 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 42 / 0.0006 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G16210 41 / 0.0007 B3 Transcriptional factor B3 family protein (.1.2) AT3G06160 41 / 0.001 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012046 [exp] 471 / 2e-166 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 436 / 2e-152 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10012040 [exp] 198 / 5e-62 AT4G01710 92 / 2e-23 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10027936 [exp] 101 / 9e-25 AT3G61370 67 / 4e-14 Protein of unknown function (DUF3245) (.1) Lus10010759 [exp] 89 / 1e-19 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 87 / 2e-18 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 80 / 1e-16 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 77 / 3e-16 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 74 / 4e-14 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 73 / 4e-14 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 66 / 8e-12 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 64 / 4e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 64 / 4e-11 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 64 / 4e-11 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 56 / 8e-09 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 55 / 4e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 51 / 5e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 44 / 0.0001 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 44 / 0.0001 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012038 pacid=23161478 polypeptide=Lus10012038 locus=Lus10012038.g ID=Lus10012038.BGIv1.0 annot-version=v1.0 ATGAGAGTCATCCTTCCACATGTCCTCCAAGCCAAGAAGATGGTTATGCCGCAGAACTTCGTGGGTCTGTGCGGGTCGAAGCTCTTGTCAACGGCAGAGC TCTTTCTGCCAAACGGCGCCGTTTGGACCGTCGGAGTGGCGAAAAGGAGAAATGCTACCGGCGTCGGGAACGAGGCCTATTTCGGTGAGAAGTGGGCCGA CACTCCATTTGCACCGGATTCTTCCTCCGATTCGACTACTTTGGGGATTCCAAGTTCTCCGTCAAGATCTACGACACCTACTGTTGCGGAATCACATACC CCCCTGCCGATCAAGTTCGCGAGGAAGTACGGGAGGAAGCTGGCGATGAAGAAGTGGTCAAACGCACAGCTCTGCATTCCAAACGGCACCGTATTCGAAA CCGGCATAACCGCTGGAAAAGACCGTAAGGAACTCTGGTTCAAAAGAGGGTGGTCCAAGTTCATGGATGACAACTCCATCAAGCAGGATTTCTTCCTCAC TTTCGAGTACACCGGCGGCTCGAGGTTCAACGTCGGCGTATTCGATCTGTCCACGTGCGAGATCGTCTACCCACCACCACCGTCACCTGCCGTCGTCAGC GAGGATGAATGCGAGGCTTTGCTGGCTGAATTGGCGGCGAGAGGAATCGAAGTGGCCAGCAAATTCAACTGCCTGACATTTCCCAAAATGTCTCCGGAAA GCAAGACCGCTTTGCGAGAAGCTATGGCCAACAAGGGACGCGATACTCCGTCGTTCATCGTCGTGATGATGCCCGCCAATCAACAACTCAGAACGACCTA CCGCATTACTGTTCCAGCTGGAATTGTGCAAAAGTTGAAGATGAAATATGAGGATCGGATGAATCTCAAGGTTTCGGGTGGCGGCGGGTCGGGTGGAATT GAAATTGAACTGAAGCATTCCGGACCATCGTTGACGATGATGGGTAAAAAGTGGACTAAGTTTTACCATGCGAATCAGTTAAGGAAGGGGACGTCTGCCT TTTCCAGGTTATCGAGTCCTCCCCCGGCAATGGAGGATTTGAGATCCTGGTTTCCATATCTCGAGTTTGATCGTGTTTGTTGA
AA sequence Show only first row Show all	>Lus10012038 pacid=23161478 polypeptide=Lus10012038 locus=Lus10012038.g ID=Lus10012038.BGIv1.0 annot-version=v1.0 MRVILPHVLQAKKMVMPQNFVGLCGSKLLSTAELFLPNGAVWTVGVAKRRNATGVGNEAYFGEKWADTPFAPDSSSDSTTLGIPSSPSRSTTPTVAESHT PLPIKFARKYGRKLAMKKWSNAQLCIPNGTVFETGITAGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYTGGSRFNVGVFDLSTCEIVYPPPPSPAVVS EDECEALLAELAARGIEVASKFNCLTFPKMSPESKTALREAMANKGRDTPSFIVVMMPANQQLRTTYRITVPAGIVQKLKMKYEDRMNLKVSGGGGSGGI EIELKHSGPSLTMMGKKWTKFYHANQLRKGTSAFSRLSSPPPAMEDLRSWFPYLEFDRVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012038 [exp]	0	1
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	18.8	0.8454
AT2G33400			unknown protein		Lus10011782 [exp]	22.0	0.8334
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	27.2	0.8121
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	29.9	0.8424
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	32.6	0.8360
AT4G02800			unknown protein		Lus10022037 [exp]	40.7	0.8350
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	59.3	0.8118
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	61.2	0.8088
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	62.5	0.8072
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	67.9	0.7888

Compare expression of checked genes

Lus10012038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.