Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 75 / 3e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 58 / 6e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 56 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 47 / 3e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31680 47 / 6e-06 B3 REM8 Transcriptional factor B3 family protein (.1) AT4G33280 46 / 1e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 43 / 7e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 44 / 8e-05 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31690 41 / 0.0006 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027937 [exp] 395 / 4e-140 AT3G18990 62 / 9e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027942 [exp] 382 / 9e-135 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012045 [exp] 312 / 5e-108 ND 44 / 2e-05 Lus10010759 [exp] 98 / 2e-23 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 97 / 2e-22 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 91 / 4e-21 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 89 / 2e-20 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 85 / 4e-19 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 83 / 3e-18 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 81 / 4e-17 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 64 / 2e-11 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 64 / 3e-11 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 56 / 3e-09 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 55 / 2e-08 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 52 / 5e-08 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 50 / 6e-07 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 49 / 2e-06 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012039 pacid=23161442 polypeptide=Lus10012039 locus=Lus10012039.g ID=Lus10012039.BGIv1.0 annot-version=v1.0 ATGTCTGCAGCCAACTTCCCATTCCTGCAATTCTTCAAGGTGATCTTGCCTAAAACCATTCAGGACAAGGAAATGATGCTTCCTAGGAGGTTCATGAAGA ATTTCAAGGACGAGTTCTCTGGTTCCGACGAGCTGAAATTGGAAGTTGCTGATGGAAGAACTTGGACAGTTGGATTGGAGGCAGAGGAAGGATATCCTAA CCGAGTCTGGCTCGTCTCAGGATTCGAGGATTTCCTCAGGTTCTACTCGATCTCTCTGAAACAGATCCTCCTCTTCAGGTACCTCGAGCCGTCCCGTCTC AAGGTCTTCATCTTGCGCTCAACGTCAATGGAGATAACTTATCCACCACTAGCCCCGGCCCCAGACTCCTCAGAACTGTTGGAGCGGCTGAAGAAGATGG AGAATATGGTACAGAGCAACAAGTTCCACTTGGTATTCGACACGGTGTCTACGAACAGCAAGAGGGCGATCGAGAGAGCTCTGGAGGAGATGAATCCGGC CAACATTTCTACGCTGGTGGTCATAGCGAGTTATCACATATCCCCTGGATTCATGCGTCTGCCAACGAAGTTTACGAACAAATTTTGCTTGGGGGATTCG GATGAGGGGACGCTGCAGCTCTCCGAGGAGGGTGCGGACCCAGATCGGGTGGTGCGTACTTGGTGGGTTGTGTTCAACAAGGTTGTTGGGATGAATCTGA GGCAGATGAGTGGATGGTCTCAGTTTCGTTCAGCCAACAAGATAGTCGAGGGAGACGTTTGTGTGTTCGAGTTGATTCCTCCGTCCGACTCCGACGCGAA GACTGTGCTGAAGGTTCGTGTCTTCAGGACCGCTGATTGA
AA sequence Show only first row Show all	>Lus10012039 pacid=23161442 polypeptide=Lus10012039 locus=Lus10012039.g ID=Lus10012039.BGIv1.0 annot-version=v1.0 MSAANFPFLQFFKVILPKTIQDKEMMLPRRFMKNFKDEFSGSDELKLEVADGRTWTVGLEAEEGYPNRVWLVSGFEDFLRFYSISLKQILLFRYLEPSRL KVFILRSTSMEITYPPLAPAPDSSELLERLKKMENMVQSNKFHLVFDTVSTNSKRAIERALEEMNPANISTLVVIASYHISPGFMRLPTKFTNKFCLGDS DEGTLQLSEEGADPDRVVRTWWVVFNKVVGMNLRQMSGWSQFRSANKIVEGDVCVFELIPPSDSDAKTVLKVRVFRTAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	3.9	0.8729
					Lus10012672 [exp]	5.3	0.8515
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10024305 [exp]	7.3	0.8488
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	9.4	0.8959
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	10.8	0.8745
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	11.7	0.8493
					Lus10032104 [exp]	15.0	0.8493
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	15.9	0.8552
AT3G47090			Leucine-rich repeat protein ki...		Lus10003071 [exp]	23.9	0.8311
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	24.9	0.8718

Compare expression of checked genes

Lus10012039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.