Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 369 / 4e-127 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 232 / 3e-75 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G01580 81 / 8e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 77 / 3e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 74 / 2e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 68 / 1e-12 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 49 / 2e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G26680 49 / 5e-06 B3 REM17 transcriptional factor B3 family protein (.1) AT2G24700 48 / 6e-06 B3 REM10 Transcriptional factor B3 family protein (.1) AT4G31690 48 / 7e-06 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027940 [exp] 646 / 0 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 269 / 7e-90 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021006 [exp] 168 / 1e-51 AT1G49480 138 / 5e-42 related to vernalization1 1 (.1) Lus10002934 [exp] 100 / 2e-23 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 98 / 1e-22 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 88 / 2e-19 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 88 / 3e-19 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 83 / 3e-17 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 81 / 9e-17 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146900 [exp] 410 / 5e-143 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 403 / 6e-140 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 259 / 1e-83 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 176 / 1e-51 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 172 / 3e-50 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 149 / 3e-40 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 69 / 2e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 70 / 6e-13 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 68 / 3e-12 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 63 / 8e-11 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012041 pacid=23161466 polypeptide=Lus10012041 locus=Lus10012041.g ID=Lus10012041.BGIv1.0 annot-version=v1.0 ATGGGACCTAACCTAACATTTAGCTGCATGCAGAGGATCCCAGATAATTTTATCAAGAAATTTGCAAATGACCTCACCCATCTTGTGAGACTGACTGTCC CTGACGGTCATGTGTGGCGCATAGGAATAGTAAAAGCTGACGACAAGTTTTGGTTTCATGATGGGTGGAATGACTTTGTCGAGAGTTACTCGATTCGTGT TGGCTACTTGCTGGTTTTCAGATACGAAGGAAATGCAATCTTCAATGTTCATATGTTCAATTTGTCTGCCTCTGAGATAAACTATCAAACTAACACTCTC AGTGGGAAAAGATGCCTTCTTTTTGACACTCTGGACGACGAGGACTCCTCCGAATACTTGAACTCCGTCCCCGTTTACCAAGTTCCTTACGCAATGAAAG CGAACAATGCACATTTGTCGAGAGTCAACAACGTTCCGCAGCCAGCAAGTCAACCTGTTGTGGAACCGAATCTTCAGGTCAATGCATTTGATCATCAACA GAATGCTTCTTCAGATGCTGCACCACCAGCTAAGGTTCCTAAGAAGCGCGGAAGAAAAAGGAAAAAACCCGATCCTAATGAGGAGCAGGCCTCAGCTGCA AGGCCCCAAGAGGATGGAGAAATGAAGTTTAGATTCTATGAAAGTGCATCTGCGAGAAAGCGAACGGTGACTGCTGAAGAGAGGGAAAGAGCTATAAGTG CAGCCAAAATGTTCGAGCCCGAAAATCCTTTCTGCCGGGTTGTGTTGCGACCGTCTTATTTGTACAGGGGCTGCATCATGTATCTACCATCCAGCTTCGC GGAGAAGAATCTGAACGGCGTTTCAGGGTTCATCAAGCTCCAGTTCACCGACGGGAAACAGTGGCCCGTCCGGTGTCTCTACAAGGGAGGTAGAGCGAAA CTAAGCCAAGGATGGTATGAGTTCACGTTGGAGAACAACATCGGGGAAGGAGATGTGTGTGTTTTCGAGATGCTCAAGTCGAGGGATGTTGTTCTGAAAG TGACCGTGTTCCGAGTCATGGACAGTTCTGCAGGCTACATGAACCTGAACCACCATCGGATGCCTATTCCTCCTCCGCCCGCAGCAGCTGCTGGTCGACA CTAG
AA sequence Show only first row Show all	>Lus10012041 pacid=23161466 polypeptide=Lus10012041 locus=Lus10012041.g ID=Lus10012041.BGIv1.0 annot-version=v1.0 MGPNLTFSCMQRIPDNFIKKFANDLTHLVRLTVPDGHVWRIGIVKADDKFWFHDGWNDFVESYSIRVGYLLVFRYEGNAIFNVHMFNLSASEINYQTNTL SGKRCLLFDTLDDEDSSEYLNSVPVYQVPYAMKANNAHLSRVNNVPQPASQPVVEPNLQVNAFDHQQNASSDAAPPAKVPKKRGRKRKKPDPNEEQASAA RPQEDGEMKFRFYESASARKRTVTAEERERAISAAKMFEPENPFCRVVLRPSYLYRGCIMYLPSSFAEKNLNGVSGFIKLQFTDGKQWPVRCLYKGGRAK LSQGWYEFTLENNIGEGDVCVFEMLKSRDVVLKVTVFRVMDSSAGYMNLNHHRMPIPPPPAAAAGRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	1.0	0.9489
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	2.0	0.9442
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	3.0	0.9322
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	8.7	0.8849
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	11.0	0.9172
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10008771 [exp]	11.4	0.9026
					Lus10022087 [exp]	13.4	0.9054
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	14.7	0.8598
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	16.3	0.9010
AT5G47020			unknown protein		Lus10007257 [exp]	17.7	0.8695

Compare expression of checked genes

Lus10012041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.