Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15900 478 / 8e-160 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) AT1G15240 144 / 5e-37 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027939 [exp] 794 / 0 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 608 / 0 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10025785 [exp] 221 / 5e-63 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10035877 [exp] 131 / 3e-32 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10036765 [exp] 67 / 6e-13 ND / Lus10042108 [exp] 43 / 0.0007 AT3G48195 657 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001232 [exp] 42 / 0.001 AT3G48195 642 / 0.0 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108300 [exp] 587 / 0 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.004G146600 [exp] 566 / 0 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.001G183100 [exp] 229 / 1e-65 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.003G053200 [exp] 212 / 8e-60 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain PF08628 [flax] [poplar] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Lus10012042 pacid=23161403 polypeptide=Lus10012042 locus=Lus10012042.g ID=Lus10012042.BGIv1.0 annot-version=v1.0 ATGGCATTAGAAGGAGAACATGGAGGTTCTATTATTTCAGAGTACTACAGTGAAGATTTTGTTGGGCATGCTTCGGATCCTGCTGTTAAGATCATTCCTG ATATAGTGTTACACAGTGATGCGACTAATGTTCCAAAGCTCAGGTCCAGGGTCATGGGAGCATACTTTGAAAAGCTTGGGTCAAAGTCCTTTGCAGTTTA TTCGATAGCAGTAACGGATGCGGATCAGAGAACTTGGTTTGTAAAGAGAAGATATAGTAATTTTGAGAGGTTGCACAGACAGCTTAAAGAGATACCAAAC TATACATTGCATTTGCCTCCAAAAAGAATCTTCTCTTCAAGCACAGAGGATGCTTTCGTCCATCAACGCTGTATTCAGCTTGATAAATATCTCCAGGATC TATTGTCTATAGCTAATGTGGCTGAGCAGCATGAAGTTTGGGATTTTTTAAGTGCTGCCTCCAAGTCATTCCTATTTTCTCACTTGATTGCCTTTGGAAA AGCAGTCAATATGGACGATGCCGTGGACGACATTATGCGTCAATTTAAAGGCGTTTCTGGTGGCTGGGGACGTAAAGCCGGCAGTTCAGCTTCTCAATTT GATGAAAGCAGTTCACCAAGATACAACAGGAATTCGCCTTGGAATGTAGATGACTCAAGTAAGGTGGTATGTAGGCAAAATACCATGGGTACTAAAAATA CCTCTTCCGACAATGATGAAACTCAACAGCAAGAAAACCATGACCAAGAGGATGTCGGACCTGGTGCACAAGCTAGTGGGTGGCATTCAGATAATGAAGT GGACTCAAGTACTTCCCCTGGTCGACTAGTCAAACAGGATGAGATGTCCAGGAGCTTAAATTTAAAGCAAAATGATGATTCTGTCATGGAATCTGATGGT AGTAATGAAGGTCGGCCCTCAGCAGTTAATTCGGCCCTAATCTCTTCTCGTGTCGAGGATCCAGTTGGCATGCCACCTGAGTGGACGCCACCTAACGTAA GTGTGCCCCTGTTGAACCTAGTTGACAAGGTGTTTCAGCTCAAGAGAAGAGGCTGGCTGAGGAGACAGGTATTTTGGATATCGAAGCAGATAGTACAGTT GATGATGGAAGATGCCATCGACGACTGGCTCTTGGGACAGATCTATTGGCTTCGGAGAGAGGAGACTATAGCTTTAGGAATCAGCTGGGTGCAAGATCTG GGACAGTTTGGTGGTAGCAAGGGGCCTAAGCAGAGCACGTTCGAGGAACAGCTCGAAGCTTCTCGCAGAGCAAATTACATCAGGAAAACACTCTTCGATG GAGTTCCAACAGCCTTAGTGAGTTTGATCGGGGCTAAGCAATACAGGCGATGCGCAAGAGATATCTATTACTTCACTCAGGTTTGA
AA sequence Show only first row Show all	>Lus10012042 pacid=23161403 polypeptide=Lus10012042 locus=Lus10012042.g ID=Lus10012042.BGIv1.0 annot-version=v1.0 MALEGEHGGSIISEYYSEDFVGHASDPAVKIIPDIVLHSDATNVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDADQRTWFVKRRYSNFERLHRQLKEIPN YTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQDLLSIANVAEQHEVWDFLSAASKSFLFSHLIAFGKAVNMDDAVDDIMRQFKGVSGGWGRKAGSSASQF DESSSPRYNRNSPWNVDDSSKVVCRQNTMGTKNTSSDNDETQQQENHDQEDVGPGAQASGWHSDNEVDSSTSPGRLVKQDEMSRSLNLKQNDDSVMESDG SNEGRPSAVNSALISSRVEDPVGMPPEWTPPNVSVPLLNLVDKVFQLKRRGWLRRQVFWISKQIVQLMMEDAIDDWLLGQIYWLRREETIALGISWVQDL GQFGGSKGPKQSTFEEQLEASRRANYIRKTLFDGVPTALVSLIGAKQYRRCARDIYYFTQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15900			Phox-associated domain;Phox-li...		Lus10012042 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	4.9	0.8357
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	6.0	0.8313
AT5G28850			Calcium-binding EF-hand family...		Lus10027963 [exp]	6.2	0.8230
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	10.8	0.8103
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	12.2	0.8047
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	13.7	0.7652
AT3G20720			unknown protein		Lus10011166 [exp]	16.9	0.8012
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	19.4	0.7954
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	20.7	0.7804
AT5G11700			unknown protein		Lus10043045 [exp]	23.3	0.7665

Compare expression of checked genes

Lus10012042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.