Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15900 381 / 9e-125 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) AT1G15240 177 / 3e-50 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027939 [exp] 640 / 0 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 241 / 2e-72 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10035877 [exp] 181 / 1e-50 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10025785 [exp] 175 / 2e-48 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146600 [exp] 443 / 7e-148 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.009G108300 [exp] 431 / 2e-143 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.003G053200 [exp] 187 / 8e-53 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.001G183100 [exp] 174 / 2e-48 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [flax] [poplar] PXA PXA domain
Representative CDS sequence Show only first row Show all	>Lus10012043 pacid=23161390 polypeptide=Lus10012043 locus=Lus10012043.g ID=Lus10012043.BGIv1.0 annot-version=v1.0 ATGTGGATTAACCTTCCAATATCAATCCTCATTGTTGCTGCATTGCGGATACTGTCTAACGAAGTGGAGTTTTACTGGAAGCCACGCAACTTAGTCCGGC CACAATCGTATCTGTCTCATTTGGAAAAGAAGCAATTATCCGTGAATGATTCGCGGCTTTCTTCTGCACCGCCTCCACCGAGATGGAGGAGGAAGATTGA TTCACCTGTGGTGGAGGCTTCAGTCAATGACTTTATTGATAAGATAATGAAGGACTTTGTGGTTGATCTCTGGTACTCTGAAATTACGCCTGACAAGGAT GCCCCAGAGTTGATACGTGGAGTGATAATGGATGCCCTTGGTGAGATATCGGGGAGAGTTAAAGAGATTAACGTTGTTGATATGCTTACAAGGGATATAC TTGATTTAATAGGTGATCACTTGGATCTCTTTAGACGGAATCAAGCAGCAATTGGTGTTGATGTAATGAGAACTCTCTCAACTGAGGAGCGAGATGAAAG GCTGAAACATCATCTAATGGAATCAAATGAGCTCCATCCAGCTTTGATATCTCCAGAGAGTGAGTATAAGGTTCTTCAGCGGATAATGTCTGGCGTTTTA GCAGTAGTGTTAAGACCACGAGAAGCTCAATCCCCCTTGGTGCGGACTATTGCCAGAGAGATTGTTACTTGCTTGGTAATGCAACCAGTTTTGAATCTTG CAAGCCCCGTGTATATCAATGAGGTGATTGAATTAATCTTGCTTGCCGTTATAGATAACAACCCAATGAACACAGGAAATGATCAGGCCAGTGGGTTTGC AAACAGTGGAGCATCTGTCTCGCAGAAATGCTCTACACTGGATCCTACTAGTGCCATAACTCCAACTAAGTCTAGAACTCATGAAGACACCTCAATGGAT GATGGTGTAGATCACCCAGACTCTCCACGCCATGCCGTTTGGGGGAAGATGCTAGAGGCTGCAACACAGAGAAGAACTGAAGTTCTCACACCTGAAAAAA TTCTGTAG
AA sequence Show only first row Show all	>Lus10012043 pacid=23161390 polypeptide=Lus10012043 locus=Lus10012043.g ID=Lus10012043.BGIv1.0 annot-version=v1.0 MWINLPISILIVAALRILSNEVEFYWKPRNLVRPQSYLSHLEKKQLSVNDSRLSSAPPPPRWRRKIDSPVVEASVNDFIDKIMKDFVVDLWYSEITPDKD APELIRGVIMDALGEISGRVKEINVVDMLTRDILDLIGDHLDLFRRNQAAIGVDVMRTLSTEERDERLKHHLMESNELHPALISPESEYKVLQRIMSGVL AVVLRPREAQSPLVRTIAREIVTCLVMQPVLNLASPVYINEVIELILLAVIDNNPMNTGNDQASGFANSGASVSQKCSTLDPTSAITPTKSRTHEDTSMD DGVDHPDSPRHAVWGKMLEAATQRRTEVLTPEKIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15900			Phox-associated domain;Phox-li...		Lus10012043 [exp]	0	1
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	1.0	0.9539
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	2.0	0.9506
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	5.0	0.9377
AT4G31570			unknown protein		Lus10026934 [exp]	5.3	0.9381
AT4G31570			unknown protein		Lus10020133 [exp]	5.5	0.9396
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036197 [exp]	6.9	0.9085
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	8.5	0.9366
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	10.0	0.9309
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	10.9	0.9324
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	11.6	0.8941

Compare expression of checked genes

Lus10012043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.