Plant FIBer expression Database

Lus10012044 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15890 156 / 6e-48 MEE14 maternal effect embryo arrest 14 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027938
[exp]
358 / 1e-127 AT2G15890 160 / 2e-49 maternal effect embryo arrest 14 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G108200
[exp]
177 / 5e-56 AT2G15890 194 / 5e-63 maternal effect embryo arrest 14 (.1.2)
PFAM info
Representative CDS sequence
>Lus10012044 pacid=23161459 polypeptide=Lus10012044 locus=Lus10012044.g ID=Lus10012044.BGIv1.0 annot-version=v1.0
ATGAATTCCACGGCGATGGCGACGAAATCAGCCCTCCTTCCTCCTCCTCTTCCATTGCCCCAACCCAAATCTGATTTTATCCCCTTAAGAAAGACCATTT
CCTCTTCTTTTGCCATTAGAGCTTCCAGAGGAAAAGTCCCGAAGCTGGAGCCCTTCAGCCGGAGCAAGATGGATCGGGCTCTCCCCGACCCGCCCCTCAT
CGAAAAGTCCCTCAACCAGATCGCCGATTACTGCTCGAATCTGGAAGGAGACGATGCTTCCAGCGGCTGGCAAGCCTATTTCGAGCTCAGGGACCTCCAA
GCAAGGGTTCCGGAGCGGGAAGTGGAGATGCTGATACACCAGGCCGGCGGGGTGAAAACCTTGATCTCCTACCTACACAGCATGACACCAATGTTTAGCA
ACTACAAAAGACTCACCAGTACAGACAACAATGGTGGCAGCACCTCTTTTCTTCAGCAAGGAGGAAGCTTGAAGACGATGAAGGAAGAATGCCCGATCCC
GGACGGGCTGCCGAGGCCGCAGGAGGAGATCGACGAGGAAGAGGAAGCTAGAATGCCTGATACTCCGCATACCAGGTTGCTCAGAGCTAGGAGCAGGTTT
CCTGCTTGGTACACTCCCCGGCCTGACCATGAGACCGATTGA
AA sequence
>Lus10012044 pacid=23161459 polypeptide=Lus10012044 locus=Lus10012044.g ID=Lus10012044.BGIv1.0 annot-version=v1.0
MNSTAMATKSALLPPPLPLPQPKSDFIPLRKTISSSFAIRASRGKVPKLEPFSRSKMDRALPDPPLIEKSLNQIADYCSNLEGDDASSGWQAYFELRDLQ
ARVPEREVEMLIHQAGGVKTLISYLHSMTPMFSNYKRLTSTDNNGGSTSFLQQGGSLKTMKEECPIPDGLPRPQEEIDEEEEARMPDTPHTRLLRARSRF
PAWYTPRPDHETD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15890 MEE14 maternal effect embryo arrest ... Lus10012044
[exp]
0 1
AT5G14880 Potassium transporter family p... Lus10014531
[exp]
1.4 0.9279
AT4G31040 CemA-like proton extrusion pro... Lus10021616
[exp]
2.8 0.9137
AT1G03090 MCCA methylcrotonyl-CoA carboxylase... Lus10022077
[exp]
2.8 0.8638
AT1G06410 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10005425
[exp]
3.2 0.8778
AT5G02170 Transmembrane amino acid trans... Lus10010855
[exp]
3.5 0.8920
AT4G19985 Acyl-CoA N-acyltransferases (N... Lus10028990
[exp]
3.5 0.9128
AT2G15230 ATLIP1 lipase 1 (.1) Lus10027861
[exp]
4.9 0.8756
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Lus10028166
[exp]
7.1 0.8564
AT4G31040 CemA-like proton extrusion pro... Lus10040575
[exp]
7.5 0.8696
AT3G27010 TCP ATTCP20, PCF1, ... ARABIDOPSIS THALIANA TEOSINTE ... Lus10037046
[exp]
8.7 0.8071

Lus10012044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.