Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18960 45 / 2e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24696 45 / 3e-05 transcriptional factor B3 family protein (.1) AT4G01580 41 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012039 [exp] 312 / 3e-108 AT3G18990 74 / 4e-15 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027942 [exp] 283 / 1e-96 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027937 [exp] 260 / 1e-87 AT3G18990 62 / 9e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 68 / 4e-13 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 66 / 2e-12 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 64 / 5e-12 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 62 / 3e-11 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 61 / 1e-10 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032159 [exp] 57 / 2e-09 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 62 / 5e-11 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 42 / 0.0002 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012045 pacid=23161427 polypeptide=Lus10012045 locus=Lus10012045.g ID=Lus10012045.BGIv1.0 annot-version=v1.0 ATGTCTGCAGCCAACATCCCATTCCTGCAATTCTTCAAGGTGATCTTGCCTGAAACCATTCAGGACAAGGAAATGATGCTTCCTCGGAGGTTTATGAAGA ATTTCAAGGCCGAGTTCTCCGGTTCCGAGCTGACATTGGAAGTTGCTGATGGAAAAACTTGGACAGTTGGATTGGAGGCAGAGGAAGGATATCGTAACCG AGTCTGGCTAGTCTCAGGATTCGACGATTTCCTCAGGCACCACGAGCCGTCCCGTCTCAAGGTCTGCATCTTGCGCTCAACGTCAATGGAGATAACTTAT CCACCACTAGCCCCGGCCCCTGACTCCTCCGAACTGTGGGAGCGGCTGAAGAAGACGAAGAACATGATTTTGAGCTGTAGGTTCCAGTACTGGACACTCG AGGCGATGTCCGCGAACACAAAGAGGGCGATCCAGAGAGCTGTGGAGGAGAAGAATCCGGCCGACATTTCTACGATGGTGATCTTAATGGCTGATCATAT ATCCCCAGGAACCATGCGTCTTCCGACCAAGTTTACGAAGAAATTCTGCTCCGGGAATTCGGATAAGGTAACGCTCCAGCTGTACGAGGACGGGGCGAAT CGAGTTGTGCGTACTTGGCCGGCTTATTTGATTGTTCGGTCGAACCAGAGGCAGGTGGCTAGATGA
AA sequence Show only first row Show all	>Lus10012045 pacid=23161427 polypeptide=Lus10012045 locus=Lus10012045.g ID=Lus10012045.BGIv1.0 annot-version=v1.0 MSAANIPFLQFFKVILPETIQDKEMMLPRRFMKNFKAEFSGSELTLEVADGKTWTVGLEAEEGYRNRVWLVSGFDDFLRHHEPSRLKVCILRSTSMEITY PPLAPAPDSSELWERLKKTKNMILSCRFQYWTLEAMSANTKRAIQRAVEEKNPADISTMVILMADHISPGTMRLPTKFTKKFCSGNSDKVTLQLYEDGAN RVVRTWPAYLIVRSNQRQVAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012045 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010475 [exp]	1.0	0.9423
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10024846 [exp]	1.7	0.8056
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008979 [exp]	2.0	0.8954
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	8.2	0.7598
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	10.2	0.7516
					Lus10034814 [exp]	11.7	0.7270
					Lus10011766 [exp]	12.1	0.7149
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	15.9	0.7081
					Lus10035508 [exp]	16.7	0.7081
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	17.5	0.7081

Compare expression of checked genes

Lus10012045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.