Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18960 79 / 6e-17 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 78 / 1e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 76 / 3e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 67 / 1e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G16210 47 / 6e-06 B3 Transcriptional factor B3 family protein (.1.2) AT3G06220 44 / 6e-05 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 44 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G35310 44 / 0.0001 B3 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027943 [exp] 624 / 0 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10012038 [exp] 479 / 2e-169 AT3G18990 67 / 5e-12 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012040 [exp] 208 / 3e-65 AT4G01710 92 / 2e-23 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10010759 [exp] 118 / 8e-30 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 117 / 4e-28 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 108 / 2e-26 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 97 / 5e-22 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 90 / 7e-21 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 80 / 1e-16 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 88 / 7e-19 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 78 / 2e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 77 / 4e-15 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 75 / 2e-14 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 63 / 1e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 58 / 2e-09 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 56 / 4e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 54 / 6e-08 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 52 / 1e-07 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 52 / 4e-07 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012046 pacid=23161458 polypeptide=Lus10012046 locus=Lus10012046.g ID=Lus10012046.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCCAAGCATGGTGGAGCTTCTTCATCATCATCTCCTCTGATTTCCTCTCCTCCGCAACAGAGTTTCATGAGAGTCATCCTTCCACATGTCC TCCAAGCCAAGCAGATGGTTATGCCGCAGAACTTCGTGGGTCTGTACGGGTCGGAGCTCTTGTCGACGGCAGAGCTCTTTCTGCCAAACGGCGCCATTTG GACCGTCGGCGTGGCGAAAAGGAGAAATGCTACCGGCGGCTGGAACGAGGCCTATTTTGGTGAGAAGTTGGCCGAGTTCGTGGGCCGACACTCCATTCGC ACCGGATTCTTCCTCCGATTCGACTACCTTGGGGATTCCAAGTTCTCCGTCAAGATCTACGACACCAATTGTTGCGGAATCACATACCGTTCTCCCTCCG GCCCCTCCGCCGCCGGCGAAGTAGAAGATACGAGCGTCGAGAACTTCTTCCGACTCATCATGCCAAGTGTCATCGAAGAGAAACAACTCCCCCTGCCGAT CAAGTTCGCGAGGAAGTACGGGAGGAAGCTGGCGATGAAGAAGTGGTCAAACGCACAGCTCTGCCTTCCAAACGGCACCGTATTCGAAGCCGGCATAACC GCTGGAAAAGACCGTAAGGAACTCTGGTTCAAAAGAGGGTGGTCCAAGTTCATGGATGACAACTCCATCAAGCAGGATTTCTTCCTCACTTTCGAGTACA CCGGCGGCTCGAGGTTCAACGTCGGCGTATTCAATCTGTCCACGTGCGAGATCCTCTACCCACCACCACCGCCACCTGCCGTCGTCAACGAGGATGAATG CGAGGCTTTGCTGGCTGAATTGGCGGCGAGAGGAATCGAAGTGGCCAGCAAATTCAGCTGCCTGACATTTCCCAAAATTTCTCCGGAAAGCAAGACCGCT TTGCGAGATGCTATGGCCAACAAGCGACGCGACATTCCGTCGTTCATCGTCGTGATGATGCCCGCCAATCAACAACTCAGAACGACCTACCGCATTACTG TTCCAACTGGAATTGTGCAAAAGCTGAAGATGAAATATGGGGATCGGGTGAATCTTAAGGTTTCGGGCGGCGGGTCGGGTGGATTTGAAATTGAACTGAA GCATTCCGGATCATCGTTGACGATGGTGGGTAAAAACTGGACTGCGTTCTACCATGCAAATCAGTTGAAGGAAGGAGACGTCTGCCTTTTCGAGGTTGTC GAGTCCTCCAGCAATGGATTTGAGATTCGAGTTTCCATATCTCGAGCTTGA
AA sequence Show only first row Show all	>Lus10012046 pacid=23161458 polypeptide=Lus10012046 locus=Lus10012046.g ID=Lus10012046.BGIv1.0 annot-version=v1.0 MAAAKHGGASSSSSPLISSPPQQSFMRVILPHVLQAKQMVMPQNFVGLYGSELLSTAELFLPNGAIWTVGVAKRRNATGGWNEAYFGEKLAEFVGRHSIR TGFFLRFDYLGDSKFSVKIYDTNCCGITYRSPSGPSAAGEVEDTSVENFFRLIMPSVIEEKQLPLPIKFARKYGRKLAMKKWSNAQLCLPNGTVFEAGIT AGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYTGGSRFNVGVFNLSTCEILYPPPPPPAVVNEDECEALLAELAARGIEVASKFSCLTFPKISPESKTA LRDAMANKRRDIPSFIVVMMPANQQLRTTYRITVPTGIVQKLKMKYGDRVNLKVSGGGSGGFEIELKHSGSSLTMVGKNWTAFYHANQLKEGDVCLFEVV ESSSNGFEIRVSISRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	0	1
AT1G54215			proline-rich family protein (....		Lus10037669 [exp]	4.5	0.9909
AT1G73620			Pathogenesis-related thaumatin...		Lus10031346 [exp]	5.9	0.9891
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	6.9	0.9905
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	8.4	0.9923
AT3G13898			unknown protein		Lus10008387 [exp]	11.7	0.9428
AT2G13820		AtXYP2	xylogen protein 2, Bifunctiona...		Lus10031115 [exp]	13.2	0.9765
AT5G41685			Mitochondrial outer membrane t...		Lus10007843 [exp]	14.3	0.9677
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	14.7	0.9906
AT3G57830			Leucine-rich repeat protein ki...		Lus10023830 [exp]	16.8	0.9719
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	20.8	0.9888

Compare expression of checked genes

Lus10012046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.