Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19020 474 / 1e-155 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 456 / 2e-151 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 448 / 2e-148 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 447 / 3e-146 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 392 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 391 / 6e-126 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 387 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 370 / 4e-118 LRX1 leucine-rich repeat/extensin 1 (.1) AT1G62440 369 / 2e-116 LRX2 leucine-rich repeat/extensin 2 (.1) AT4G28380 340 / 1e-110 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027935 [exp] 711 / 0 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 592 / 0 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 389 / 3e-125 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 363 / 2e-119 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 342 / 4e-109 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10037905 [exp] 334 / 1e-107 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 324 / 1e-104 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 315 / 2e-100 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 316 / 9e-99 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146350 [exp] 498 / 5e-166 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 487 / 2e-158 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 432 / 1e-143 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 399 / 9e-130 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 388 / 6e-127 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 389 / 6e-124 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 377 / 4e-123 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.007G139200 [exp] 368 / 3e-121 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 350 / 1e-112 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 321 / 5e-103 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012047 pacid=23161476 polypeptide=Lus10012047 locus=Lus10012047.g ID=Lus10012047.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCCTTTCTCAACTCCTTGGGCTGCCTTCTCCTTCTCTTCCTCTCCCTTTGTTCTTCTCCTTCATTCTCGGCCTTCTCCAATGCCCTGACGG ATGCAGAAGCCTCCTACATAGCCCGCCGTCAGCTCCTAACCTTGAACGAGCAGGGTAAAGAGTCGGCGGGGAGCGATGTGGATCCTAATTTAAAGTTTGA GAATCCTAGGTTGAAGAACGCCTATGTGGCCCTGCAGGCGTGGAAGAAGGGCATTTACTCGGACCCGATGAACATGACTGCCATGTGGGTGGGGTCAGAC GTATGCTCCTACAAGGGGGTGTATTGTGCCCCCGCACTGGATGACTCGAAACTGAACGTTGTTGCGGGGATCGATCTCAACCATGCTGACATTGCTGGGT ATTTTCCCTCTGAGTTGGGTTTGCTCACCGACCTGGCGTTGTTGCATCTGAACTCGAACAGATTTTGCGGGATCATCCCAATGTCGTTTTGCAACATGAA GATAATGTACGAGTTCGATGTGAGCAACAACCGCCTCGTGGGGCCTTTCCCTCAGGTTGTGATGTGTTGGAAGGAGGTCAAGTTTGTTGACCTTAGGTTC AACAACTTTGAAGGGAGCTTGCCGCCGGAGGTCTTCACTAAGGGACTTGACGCCCTGTTCTTGAACAACAACCGGTTCACGTCGTCGATCCCTGAGACGC TCGGTAACTCCACGGTTAGCGTTGTCACGTTGGCTTTCAACAACTTCACCGGTTGTATCCCTCACAGCATCGGGAAGATGCCCAACGTCCAGGAGATCAT CTTCGCCGGAAACAGCCTTGGAGGTTGCTTCCCGCCGGAGATCGGAAACCTCAAGAATGTGACTGTGTTTGACGTGAGCAATAGCGGCTTCGTGGGTCCC ATCCCGTCAAGCTTTTCAGGGTTGAAGAGCGTTGAGATGTTGGATATTTCGAACAACAAGATGACCGGATTAGTGCCTGAGGAGATCTGCAAGCTGCCGG CGTTGAAGAATTTCACGTTCGGTTCTAACTATTTCAACGGAGAGGGGCCATCTTGTAACTCAAAGTCGAGGAGAGATGTGGAGTTCGATGATCATGATAA TTGTTTGTTGGATCGGCCGATGCAGAAGACTCCTAAAGTTTGCAATCCGGTGGTGATGAAACCGGTAGATTGTAGTAAGGATAAGTGTGGCGGTGGAGGT GGTGGTGGCGGTAGCAGTAAGGGTGGTGGAGGAGAAGCTCCACCGAAGCCAAAGCCGACACCGTCGCCAGAGGAGGACCCACATTTGCCGGCTAGCGGTG GAATGAGCCGCCCTCCACCACCACAATCGGCGCCGGTGCCATCTCCATCATCGGTTCGCGTGTCACCTCCGCCAACGTCGGTTCCATCTCCGTCGCCGGT TCGTGTGTCACCACCACCGACACCAGTTCATTCTCCTCCACCACCGGCACCGGTTCACTCCCCTCCACCACCAGCACCAGTTCACTCTCCGCCGCCTCCT CCACCGGTGTTCTCCCCGCCTCCTCCGGTCCATTCCCCACCCCCACCAGTTCACTCTCCTCCTCCTCCTCCAGTACATTCTCCACCGCCGCCCATGTACT CTCCACCACCACCGGTTCATTCCCCTCCTCCGCCGGTTCACTCTCCACCACCACCGGTTCACTCCCCTCCTCCTCCGGTTTTCTCTCCACCTCCACCCGT AGTCCCACAACCCCACCCGACGCCAGACACCCCCAATCTCACCCGAGCCAGAGCCCTCCGTTCCTCCTCCATCCAAATCACCCCCACCGGAGTCAAAACC ACCGCAGCTTCCTCCTCCAGCGAAATCATTACCACCGGAGCCGGAACAACCCCTTCCTCCTCCATCAGAATCATCACCCCCACCGGAGGAGCCCGAACAC TCTCTTCCTCCTCCAGCCAAATCATCACCACCGGAGCAAGAACGCCCTCTTCCTCCACCGGCGAAATCATCACCGTCGCCAATGCCAGACGTAGTCCTCC CGCCAAACCTTGGCTTCCAATACTCGTCTCCTCCGCCGCCGATGTTCCCAGGCTACTAATTCACAAACACTAA
AA sequence Show only first row Show all	>Lus10012047 pacid=23161476 polypeptide=Lus10012047 locus=Lus10012047.g ID=Lus10012047.BGIv1.0 annot-version=v1.0 MAPPFLNSLGCLLLLFLSLCSSPSFSAFSNALTDAEASYIARRQLLTLNEQGKESAGSDVDPNLKFENPRLKNAYVALQAWKKGIYSDPMNMTAMWVGSD VCSYKGVYCAPALDDSKLNVVAGIDLNHADIAGYFPSELGLLTDLALLHLNSNRFCGIIPMSFCNMKIMYEFDVSNNRLVGPFPQVVMCWKEVKFVDLRF NNFEGSLPPEVFTKGLDALFLNNNRFTSSIPETLGNSTVSVVTLAFNNFTGCIPHSIGKMPNVQEIIFAGNSLGGCFPPEIGNLKNVTVFDVSNSGFVGP IPSSFSGLKSVEMLDISNNKMTGLVPEEICKLPALKNFTFGSNYFNGEGPSCNSKSRRDVEFDDHDNCLLDRPMQKTPKVCNPVVMKPVDCSKDKCGGGG GGGGSSKGGGGEAPPKPKPTPSPEEDPHLPASGGMSRPPPPQSAPVPSPSSVRVSPPPTSVPSPSPVRVSPPPTPVHSPPPPAPVHSPPPPAPVHSPPPP PPVFSPPPPVHSPPPPVHSPPPPPVHSPPPPMYSPPPPVHSPPPPVHSPPPPVHSPPPPVFSPPPPVVPQPHPTPDTPNLTRARALRSSSIQITPTGVKT TAASSSSEIITTGAGTTPSSSIRIITPTGGARTLSSSSSQIITTGARTPSSSTGEIITVANARRSPPAKPWLPILVSSAADVPRLLIHKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	0	1
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	1.4	0.9949
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	5.5	0.9899
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	5.9	0.9691
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	6.2	0.9928
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	7.2	0.9838
					Lus10005830 [exp]	7.5	0.9928
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	8.7	0.9928
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	9.4	0.9881
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	9.7	0.9928
AT3G47570			Leucine-rich repeat protein ki...		Lus10030636 [exp]	9.7	0.9547

Compare expression of checked genes

Lus10012047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.