Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20040 492 / 1e-172 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) AT2G27760 82 / 2e-16 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT3G63110 79 / 9e-16 ATIPT3 isopentenyltransferase 3 (.1) AT5G19040 77 / 2e-15 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 70 / 4e-13 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT1G68460 68 / 2e-12 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT3G19160 59 / 2e-09 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT4G24650 57 / 7e-09 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT1G25410 44 / 0.0001 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027928 [exp] 587 / 0 AT5G20040 363 / 1e-119 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Lus10020566 [exp] 95 / 1e-20 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10006281 [exp] 92 / 7e-20 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10012372 [exp] 84 / 1e-17 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10028015 [exp] 80 / 3e-16 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10004428 [exp] 77 / 2e-15 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 74 / 4e-14 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034332 [exp] 69 / 2e-12 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034334 [exp] 63 / 1e-10 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G376600 [exp] 565 / 0 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Potri.009G147600 [exp] 92 / 6e-20 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.014G139300 [exp] 84 / 2e-17 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.004G150900 [exp] 78 / 1e-15 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G202200 [exp] 77 / 3e-15 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G030500 [exp] 76 / 6e-15 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 61 / 5e-10 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G121500 [exp] 60 / 2e-09 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 57 / 1e-08 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10012051 pacid=23161497 polypeptide=Lus10012051 locus=Lus10012051.g ID=Lus10012051.BGIv1.0 annot-version=v1.0 ATGCTATGTAGCCAACTGTCCCTCCGTTCACGTTGCCTCCGCTCCTTCCCCCGGCCGTTTGCAACTTCTTCCGTCTCCGCCGCCACAGCGGCGGCGAAGA AGAAAGGGAAGGTAGTCGTGATTTCCGGGCCGACAGGTGCCGGAAAGAGCAGGCTCGCGCTCGAACTAGCGAAGCAGCTTCGCGGTGAAATCATCAGTGC TGACTCCGTCCAGGTATATCGTGGTATGGATGTTGGATCAGCGAAACCTTCTCACAGTGAAAGAGAGGTGCTTCCTCCTTCCATGATTAGCGTGGTTTTT TGCCTCGAAGTGCGACACCATTTGATTGACATATTGGACCCATATGAAGATTACTCAGTTGGACGGTTCTTTAGAGATGCTAGACAAGCCACACAAGATA TTCTCAATCGCGGCAGTGTCCCTGTAGTTGTTGGTGGGACGGGACTGTACTTGAGATGGTTCATATATGGGAAACCTGATGTTCCACAAGCTACAGTGGA TGTTGCTTCTGAAGTTGACTCTGAGCTTGCTGAACTACAACGCAATAATGATTGGGACACGGCAGTGCAATTAGTGGTCAAAGCAGGTGATCCAAGGGCA CGAGATTTACCAGTCAATAATTGGTACCGTTTGCGGCGCAGCCTTGAGATTATCAAGGCTAGTGGATTCCCTCCATCCACTTTTAAAGTTCCATATGATT CTTTCAAGGAAGAAGCAATCTCAAATCCAACAGATAGCTCGTGCAGTGGTGGGGATGTAGACTCAAAAGATTTAGACTATGAGTTTCTATGCTTTTTCCT CTCAAGCCCCAGACTTGATTTATACAGATCAATTGATTATCGGTGTGAAGTGATGCTTTCAGAACGGTATGGACTTCTATCGGAGGCAAAAATGCTCCTT GACATGGGTCTTCTTCCAAGTTCCAATTCTGCAACTCGAGCAATTGGTTATAGACAGGCAATGGAGTATCTTTTGAGGTGTAAGCATGAAGGAGGCAGTT CAACTGGAAATTTCTTTGCCTTTCTGGCTGATTTCCAGAAAGCATCTAGAAACTTTGCGAAAAGACAAACGACATGGTTTCGCAATGAGAAAATCTATCA CTGGCTTGATGCTTCTAAGCCTTTGGAAAAGGTGGTGGAATTTGTGTATGATGCATACCACGATCAATCCGAAACTCTGGTCGTGCCTGAATCGCTTAGA ATGTCGAGATATGCCAACAGGCAAGAACTTGCACAGCTCAAGGCTTACATCGCTAAGAACAGGCATTTTATCGACCATCACGCCTGCTCTGAAACCCTCC GGTGGATAGGTGAAATCCAAAGCGATCCCGTCATGGTTCCACCGTAA
AA sequence Show only first row Show all	>Lus10012051 pacid=23161497 polypeptide=Lus10012051 locus=Lus10012051.g ID=Lus10012051.BGIv1.0 annot-version=v1.0 MLCSQLSLRSRCLRSFPRPFATSSVSAATAAAKKKGKVVVISGPTGAGKSRLALELAKQLRGEIISADSVQVYRGMDVGSAKPSHSEREVLPPSMISVVF CLEVRHHLIDILDPYEDYSVGRFFRDARQATQDILNRGSVPVVVGGTGLYLRWFIYGKPDVPQATVDVASEVDSELAELQRNNDWDTAVQLVVKAGDPRA RDLPVNNWYRLRRSLEIIKASGFPPSTFKVPYDSFKEEAISNPTDSSCSGGDVDSKDLDYEFLCFFLSSPRLDLYRSIDYRCEVMLSERYGLLSEAKMLL DMGLLPSSNSATRAIGYRQAMEYLLRCKHEGGSSTGNFFAFLADFQKASRNFAKRQTTWFRNEKIYHWLDASKPLEKVVEFVYDAYHDQSETLVVPESLR MSRYANRQELAQLKAYIAKNRHFIDHHACSETLRWIGEIQSDPVMVPP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10012051 [exp]	0	1
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	3.2	0.7906
AT2G01640			unknown protein		Lus10002816 [exp]	6.9	0.8089
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	13.5	0.7892
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	20.3	0.7303
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	21.9	0.6995
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	23.2	0.7322
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	25.3	0.6895
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	33.7	0.6792
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	33.8	0.7215
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	34.9	0.7174

Compare expression of checked genes

Lus10012051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.