Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78110 191 / 8e-59 unknown protein AT1G22230 170 / 5e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027930 [exp] 400 / 3e-141 AT1G78110 209 / 1e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094700 [exp] 220 / 5e-70 AT1G78110 254 / 1e-82 unknown protein Potri.005G166400 [exp] 217 / 6e-69 AT1G78110 265 / 6e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012052 pacid=23161489 polypeptide=Lus10012052 locus=Lus10012052.g ID=Lus10012052.BGIv1.0 annot-version=v1.0 ATGTCGACCCCTTCAGCAGACCTTCTGGTTTGTTTTCCTTCAAGGGTACCCCACCATCTCACCTTAATGCCAAGCAAACCCATCTGCAGCCCCGCCAGAG GCGATCATCAACCCAACCAACCCCGCCACCGCCGCCGCCGTTCCATCACCGGCGCCGGGAGGGGGAGGATGAAGACCAAACAGATGATGAGCTCGGTGGA CGTATCCGAACCAACGTCTCCGAAAGTGACTTGCTCAGGGCAGATCAAAGTAAAGCACAAGAAATCATCAGGAGGTAAAGGAAGCTGGCAGTCTGTAATG GAAGAGATTGAGAGGATTCATAAACAGGGGAAGTTAAAACAGAGGAGGAAGAAATCATCTTCATCACCAGGGACACAGTCTATTGGGTTCCTTGCTTGTC TTCGAAACATAAAGCTCGATCTCAGGTGCTTTGGTGTTTTCCCACAGCCGGGGATGATCAATTCCGACGACGACGAGGCAGAACAAGAAGATGATGAAGA AGAAGAAGATGGTATTGACGACGATGATGATCAAGAGGGAAGAACTGTGTTCTCGAAATGGTTCATGGTGTTGCAGGAAGAGAAGGAGGAGCTTGAAAAC AATTGTACTACTAGTACTACTACTTCTAATTGTGACCCTGTTATTCCTCCGGCGAATGCTCTGCTACTGATGCGGTGCAGGTCGGCTCCTCCGACTAAGA GTTTGAAGACGTTGATGGAAGAAGAGAAGAAGACCGATAATAATAACAGATTAGTAGTGATGAGCTACGGCGACGAAGATGCTGATTTCTACAAGATCTC GTCCGACGTGGCCAAGGAAACGTGGGTCGTTGGCGGGATCAGAGACACTTTGCCAAGAAGCCGGAGCTGGAAGAGATGA
AA sequence Show only first row Show all	>Lus10012052 pacid=23161489 polypeptide=Lus10012052 locus=Lus10012052.g ID=Lus10012052.BGIv1.0 annot-version=v1.0 MSTPSADLLVCFPSRVPHHLTLMPSKPICSPARGDHQPNQPRHRRRRSITGAGRGRMKTKQMMSSVDVSEPTSPKVTCSGQIKVKHKKSSGGKGSWQSVM EEIERIHKQGKLKQRRKKSSSSPGTQSIGFLACLRNIKLDLRCFGVFPQPGMINSDDDEAEQEDDEEEEDGIDDDDDQEGRTVFSKWFMVLQEEKEELEN NCTTSTTTSNCDPVIPPANALLLMRCRSAPPTKSLKTLMEEEKKTDNNNRLVVMSYGDEDADFYKISSDVAKETWVVGGIRDTLPRSRSWKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78110			unknown protein		Lus10012052 [exp]	0	1
AT1G78110			unknown protein		Lus10027930 [exp]	1.0	0.7863
AT5G53140			Protein phosphatase 2C family ...		Lus10014926 [exp]	3.9	0.7141
AT3G51370			Protein phosphatase 2C family ...		Lus10041861 [exp]	4.0	0.7798
AT2G17550			unknown protein		Lus10016693 [exp]	8.0	0.7713
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	8.9	0.7255
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	9.8	0.7757
AT2G44500			O-fucosyltransferase family pr...		Lus10003914 [exp]	10.6	0.7361
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	14.3	0.7532
AT5G55960			unknown protein		Lus10016650 [exp]	15.2	0.7389
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10038277 [exp]	16.0	0.7101

Compare expression of checked genes

Lus10012052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.