Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 501 / 8e-174 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 456 / 3e-156 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 426 / 1e-144 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 358 / 6e-118 YSL7 YELLOW STRIPE like 7 (.1) AT5G41000 350 / 4e-115 YSL4 YELLOW STRIPE like 4 (.1) AT3G27020 345 / 4e-113 YSL6 YELLOW STRIPE like 6 (.1) AT1G48370 343 / 8e-112 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 342 / 2e-111 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008836 [exp] 506 / 4e-176 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 486 / 5e-168 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 484 / 4e-167 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 466 / 6e-161 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 459 / 1e-157 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 421 / 2e-142 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10000879 [exp] 421 / 3e-142 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10013323 [exp] 360 / 4e-118 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 348 / 2e-113 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024700 [exp] 515 / 2e-180 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.011G055224 [exp] 517 / 3e-180 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 422 / 6e-143 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 415 / 2e-140 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.017G150500 [exp] 347 / 3e-113 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 344 / 2e-112 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 337 / 6e-110 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G151600 [exp] 334 / 1e-108 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 333 / 3e-108 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 330 / 5e-107 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10012053 pacid=23161449 polypeptide=Lus10012053 locus=Lus10012053.g ID=Lus10012053.BGIv1.0 annot-version=v1.0 ATGAGCCAAAGGGGCCGTAATGGGGAGGAAACTGATGAAGAAGATGAGAGTTTCATACACAGTAGTAGCTCAGATGAAGTTGTGGAGGAAGAAGAGGATC TGAAGAGAATCATTCCATGGACGAAGCAGCTCACGATTAGAGGGGTTGTGGCAAGTTTAGTGATTGGAATCATTTACTCGGTGATTGTGATGAAGCTCAT TCTCACTACTGGGTTAGTCCCCAACCTTAATGTCTCCGCAGCTTTGCTTGCCTTTGTGTTTGTCAAGACATGGACCAATCTCCTCAACAAAATAGGGTTC CTCACCAAGCCCTTCACTAGACAGGAGAATACCTTGATCCAGACCTGTGCCGTTTCTTGTTACACCATTGCTGTTGGAGGTGGGTTTGGGTCTTATCTTC TGGCGTTGAACCGGAAGACCTACGAACAAGCGGGTGGGGTGGATTCGGAGGGGAACAGTCCGAGGAGTGTAAAGGAACTGGGTGTCGAATGGATGACTGG TTTCTTGTTTGTCAGCAGTTTTGTTGGGTTGCTTGCTTTGGTTCCTCTTAGGAAGATCATGATAATTGACTACAAACTGACTTATCCGAGTGGAACTGCT ACTGCTGTTCTTATCAACGGCTTCCATTCCCCTAAAGGGAACAAGATGGCCAAATTCTACTACAATTTCAGCATGACTTACTTAGGAGCAGGAATGATTT GCTCCCACCTTGTGAACCTGTCGTTGCTCTTAGGCGCGGTGCTTTCTTGGGGCGTGATGTGGCCGTTGATCAGTGGACACAAAGGAGATTGGTTCTCTTC ATCCCTAAAAGAAAGCAGTATGAAGAGTTTGAATGGTTACAAGGTGTTTGTTTCTATTGCTATTATACTGGGAGATGGACTATACAACTTTCTGAAGATA CTATATCTCACAGCTACCAACCTTCTCGCAGCAAGGAAACATGTTCGAACCGGTCTTGACAGCCAGAAGAATCAGTCTCCTGTCGATGATCTTCGAAGAG ACGAAGTATTTACAAGGGAAAGCATTCCAATTTGGGTAGCTTGCATAGGTTATGCAGCCTTCTCCATCATATCCATCATTTCCGTCCCTCTAATGTTCCC CGAACTGAAATGGTACTACGTAGTGGTGGCCTACGTTCTCGCCCCATCTCTCGGTTTCTGCAACGCATATGGTGCCGGGTTAACAGACATGAACATGGCC TACAACTAA
AA sequence Show only first row Show all	>Lus10012053 pacid=23161449 polypeptide=Lus10012053 locus=Lus10012053.g ID=Lus10012053.BGIv1.0 annot-version=v1.0 MSQRGRNGEETDEEDESFIHSSSSDEVVEEEEDLKRIIPWTKQLTIRGVVASLVIGIIYSVIVMKLILTTGLVPNLNVSAALLAFVFVKTWTNLLNKIGF LTKPFTRQENTLIQTCAVSCYTIAVGGGFGSYLLALNRKTYEQAGGVDSEGNSPRSVKELGVEWMTGFLFVSSFVGLLALVPLRKIMIIDYKLTYPSGTA TAVLINGFHSPKGNKMAKFYYNFSMTYLGAGMICSHLVNLSLLLGAVLSWGVMWPLISGHKGDWFSSSLKESSMKSLNGYKVFVSIAIILGDGLYNFLKI LYLTATNLLAARKHVRTGLDSQKNQSPVDDLRRDEVFTRESIPIWVACIGYAAFSIISIISVPLMFPELKWYYVVVAYVLAPSLGFCNAYGAGLTDMNMA YN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	0	1
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	2.4	0.7881
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10010692 [exp]	3.0	0.8241
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	10.9	0.7686
					Lus10039390 [exp]	16.3	0.7533
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	16.7	0.7350
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	17.0	0.7598
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	17.6	0.7734
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10009967 [exp]	18.4	0.6758
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10034465 [exp]	24.4	0.7769
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	27.5	0.7549

Compare expression of checked genes

Lus10012053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.