Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49510 226 / 6e-74 EMB1273 embryo defective 1273 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027929 [exp] 410 / 8e-147 AT1G49510 220 / 2e-72 embryo defective 1273 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145600 [exp] 219 / 2e-71 AT1G49510 206 / 7e-67 embryo defective 1273 (.1) Potri.005G149500 [exp] 50 / 3e-07 AT1G49510 53 / 3e-08 embryo defective 1273 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012054 pacid=23161393 polypeptide=Lus10012054 locus=Lus10012054.g ID=Lus10012054.BGIv1.0 annot-version=v1.0 ATGGCGCCCTCGCTATCTCTCTCTCACTCGCTTAGCGCTTCGTTTCGTCTCCAACCACCCGCCAAATCGTTAGTAATTCCCTCCGGCGCTCGTTCTTCTC CTTCGCTTCTAGGGTTCCAGGCTGTACTGTTTATCAGTGATGAACATTGCCAGTTCTCTGTAATGTGTGTGTTTGTGCAAATGGATTCTATGGTTGATGT TTGTAGAACTGTACCACAAATCGAACTGGAATCATTTTTGTCATATCCCAAGCCATGCCATTGGGACTCGAGCATTAACTCGAAAGGAATCTCGGGGCGC GCAAGGATGAATGTCTGTTGTAGTATGAACATGGCTGCAGGGAAGTCAGGCGACGACGACGAAAACATAAGCTTTAAGCAACAACTAGTGAACAAAGCAA GAAAAGTTTGGGATAGTTGCCCCGAGCCAGTGAGGAGCTTCCCTTGGACCATAGCATTGTTCAACTTCATTCAACTTCAGGTTTATTTGATCCTCTCCGT TGTTAAGTACTTGAGCGTGCCTTTACTGCTGATTACAACCATTAGTGAGATGTCGTATTGTGCGCACGAGAGGAAGTTGTTCCTTATCGCGTTTCCGCTG GTCGTTGGATACGTTCTTGCTGGGTTGTTCAGAGAAACTGCTCTCGAGATGTCTTCTCGCCTCAAGACAGCAGAAGTTCCGTGGCATTTGTTCTTGGTCG CAACGATCTTCGTTCTGATCAAACTTCCAGGGCCATATTATCCTTACTGGGGACGGTTGCTAATTCCACACTTAGCTAATGGAGTTCTTTGGAGGACTGT TTGGTATACCTTCCTGTGGTTTAGAAGACCTAGAGATGCATCTGGCGAATTAATATCCAACTGA
AA sequence Show only first row Show all	>Lus10012054 pacid=23161393 polypeptide=Lus10012054 locus=Lus10012054.g ID=Lus10012054.BGIv1.0 annot-version=v1.0 MAPSLSLSHSLSASFRLQPPAKSLVIPSGARSSPSLLGFQAVLFISDEHCQFSVMCVFVQMDSMVDVCRTVPQIELESFLSYPKPCHWDSSINSKGISGR ARMNVCCSMNMAAGKSGDDDENISFKQQLVNKARKVWDSCPEPVRSFPWTIALFNFIQLQVYLILSVVKYLSVPLLLITTISEMSYCAHERKLFLIAFPL VVGYVLAGLFRETALEMSSRLKTAEVPWHLFLVATIFVLIKLPGPYYPYWGRLLIPHLANGVLWRTVWYTFLWFRRPRDASGELISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10012054 [exp]	0	1
AT5G28750			Bacterial sec-independent tran...		Lus10006588 [exp]	5.7	0.8466
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10016196 [exp]	6.9	0.8831
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	11.0	0.8369
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	15.0	0.8640
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10010292 [exp]	18.5	0.8013
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	18.5	0.8132
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	26.1	0.7732
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	28.5	0.8487
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028799 [exp]	29.1	0.7419
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	37.7	0.8452

Compare expression of checked genes

Lus10012054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.