Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15820 795 / 0 OTP51 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) AT5G50280 98 / 1e-20 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 78 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 77 / 2e-14 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03560 77 / 3e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 75 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 75 / 1e-13 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 71 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 71 / 3e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 71 / 3e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020996 [exp] 868 / 0 AT2G15820 737 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10027928 [exp] 409 / 2e-132 AT5G20040 363 / 1e-119 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Lus10023856 [exp] 235 / 9e-72 AT2G15820 197 / 3e-58 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10002871 [exp] 76 / 7e-14 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 75 / 2e-13 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013283 [exp] 74 / 3e-13 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10007468 [exp] 74 / 3e-13 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037517 [exp] 74 / 3e-13 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035850 [exp] 73 / 4e-13 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106800 [exp] 932 / 0 AT2G15820 855 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Potri.009G058300 [exp] 82 / 4e-16 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 80 / 3e-15 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G276500 [exp] 79 / 5e-15 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 79 / 6e-15 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 79 / 1e-14 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G032100 [exp] 78 / 1e-14 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G153900 [exp] 77 / 1e-14 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068400 [exp] 76 / 4e-14 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 76 / 5e-14 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0324 [flax] [poplar] Homing_endonuc PF03161 [flax] [poplar] LAGLIDADG_2 LAGLIDADG DNA endonuclease family CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012055 pacid=23161402 polypeptide=Lus10012055 locus=Lus10012055.g ID=Lus10012055.BGIv1.0 annot-version=v1.0 ATGAACGTCGGCACTATAGCTCCAGACATTTCCCTTTCCAAACCCCTCCCAGCTCACAATTCTCCTTTCCTTCTTCCAAACCATACTCCTCCAGTAAACC TCTATCCCCACCATATGCGCATCTCTATTCTATCCCCAGTCTCCTTCCTCACCAACACCTTCTCCCGCCGCCGAATCTTCCTCCTCCGTTCTCTAACTTC ACCCACCAAAACCACCCACTACCCGTTTCACCCGATTCGCCTGGCGAAGTCCTTCAGTCATTCCGTCGAGCACTTGGCGTGCGATTCCCAGAAATTGGAT TCCGACGAGTTCAAGTTCGAAGGTGACGACGGTGATGGTTCAGGTAGAGACCTGAAGCACCTGGATTCCCCTGGTGTGGAGGTGACTGAGCTGGAGGAGC TTCCCGAGCAATGGCGGAGGGCGAGACTAGCGTGGCTGTGCAAGGAGCTCCCTGCGCACAAGGCAGGGACTGTTGTTCGGATTTTGAATGCGCAGAGGAA ATGGATGAGGCAGGATGATGTCACTTATCTCGTCGTCCATTGCACTCGAATTCGCGAGAATGAGGTTGCTTTCAAGGTATACAAATGGATGATGCAGCAA CGTTGGTACCGATTCGACTTTGCTCTAGCGACGAAGCTAGCTGATTACTTAGGAAAAGAACGAAAGTTCACCAGATGTCGAGAGGTCTACGACGATATCG TAAACCAAGGACGAGTCCCTAGCGAATCAACGTTCCACATTTTAGTCGTGGCATACCTCGGTGCATCGGTCGAAGGCTGCCTAGACGAAGCATGCGCTAT TTACAATCAAATGATCCATCTCGGAGGCTACACTCCACGGCTCAGCCTGCACAATTCGCTCTTCAGAGCCCTTGTAGCGAAGCCACGAGACTCGAAGAGG TATCTTAAACAGGCTGAGTTCATTTACCATAACATAATGGCAACCGGGCTCGAGGTCCAGAAGGATATCTACGGCGGCCTTATCTGGCTGCATAGCTATC AGGACGTCGTGGATAAGGAAAGAATCATGGAATTGAGAGAAGAGATGTCGCGAGCCGGAATCGAGGAAGGGAAAGATGTTGTTGTGTCGATCTTGAGAGC TTGCTCGAAGGATGGCAACCTTGAGGAATCCGAGAAAGCTTGGGCGAAACTCGTCGGGTTTAAGGTCAGCATTCCTTCTCTAGCCTTTGTGTACAGAATG GAGACTTTTGCGAAAACCGGAGAGCCTATGAAATCCATGGAGACGTTCCGGAAGATGCAACAGCCGACGATTTCGGCCTATCAGAAGATAATCGAGGTAA TGTGCAAGGCTCGAGAAGTTCAGCTTGCGGAATCGCTTATGGCCGAGCTCGTTGAAAGCGGTTTGAAGCCGCTTACACCGTCTTACGTTGAGCTAGTGAC GTTGTACTTGAGCTTAGGTGTGCATCATAACAAGGTCGAATCGGTTTTCGAGTCATGTGTCGAGAAATGCCAGCCCAATCGAGCTTTATACAATCTGTAC TTGGATTCTTTGGTGAGAGCTGGGGAGCTTGGTAAAGCAGAGGAAATTTTCAAGTATATGCAGAGTACTGAATCCATCGGGGTGAACTCGGTGACGTGTA ACACCATTCTTTCGGGGTATCTCGAATCGGAAAACCATGTCAAAGTGGAGAAAGTCTACGACTTGATGTCCAAGAAACGGTACATTGTCGAATCTCCATC CATGAACAAGCTCGAGCATGTTCTCAACTCGAGCAGGAAGAATGTCAAGAAACCGACGATCCTCAAGCTGACTGCGGAACAACGAGAAGCATTGGTTGGA CTTTTACTCGGCGGATTGAAGATCGAATCCGACGATTATAGAAAGAACAGACACAGGATCATGTTTGAGCTCAACGAGAATTCCACGCAGCATTCGGTTC TGAGACACCACCTCTACGACGAGTATCATGAGTGGTTGCATCCTTCGTGCAGGCTAACCAACGATCTCGACGAGATACCATACAGGTTCGCCACGATTTC GCATTTGTATTTCGGATTCTACGCCGACCAGTTCCAGCCAGGCGGCAGGTTCGCGATACCGAAACTGATACACCGGTGGCTATCGCCTCGAGCTCTAGCG TACTGGTACATGTACGGAGGGTGTAAAGTGATGCCGTCTGGGGACATAGTGTTGAAGCTTAAGGGTGATGATGAAGGTGTTGCTAGAGTTGTTAAAGCGC TGAGAGGAAAATCTCTTGAGTGTAGAGTGAAGAGGAAAGGTAGGAATTTTTGGATTGGGTTTGTTGGGGAAAGTTCTGAGTGGTTTTGGAAATTGGTTGA GCCTTATGTGTTAGGTGGGTTGCAAGAGTGTTTACGAGCTGGGGGTTCGAGGGGTTCTGCTGATGGTCACTTCGGTAGTGAGTCCGGTGATGATGAAGTT GGGGACGGAGATGGATTGGATCGTGGCCTCGGCTAG
AA sequence Show only first row Show all	>Lus10012055 pacid=23161402 polypeptide=Lus10012055 locus=Lus10012055.g ID=Lus10012055.BGIv1.0 annot-version=v1.0 MNVGTIAPDISLSKPLPAHNSPFLLPNHTPPVNLYPHHMRISILSPVSFLTNTFSRRRIFLLRSLTSPTKTTHYPFHPIRLAKSFSHSVEHLACDSQKLD SDEFKFEGDDGDGSGRDLKHLDSPGVEVTELEELPEQWRRARLAWLCKELPAHKAGTVVRILNAQRKWMRQDDVTYLVVHCTRIRENEVAFKVYKWMMQQ RWYRFDFALATKLADYLGKERKFTRCREVYDDIVNQGRVPSESTFHILVVAYLGASVEGCLDEACAIYNQMIHLGGYTPRLSLHNSLFRALVAKPRDSKR YLKQAEFIYHNIMATGLEVQKDIYGGLIWLHSYQDVVDKERIMELREEMSRAGIEEGKDVVVSILRACSKDGNLEESEKAWAKLVGFKVSIPSLAFVYRM ETFAKTGEPMKSMETFRKMQQPTISAYQKIIEVMCKAREVQLAESLMAELVESGLKPLTPSYVELVTLYLSLGVHHNKVESVFESCVEKCQPNRALYNLY LDSLVRAGELGKAEEIFKYMQSTESIGVNSVTCNTILSGYLESENHVKVEKVYDLMSKKRYIVESPSMNKLEHVLNSSRKNVKKPTILKLTAEQREALVG LLLGGLKIESDDYRKNRHRIMFELNENSTQHSVLRHHLYDEYHEWLHPSCRLTNDLDEIPYRFATISHLYFGFYADQFQPGGRFAIPKLIHRWLSPRALA YWYMYGGCKVMPSGDIVLKLKGDDEGVARVVKALRGKSLECRVKRKGRNFWIGFVGESSEWFWKLVEPYVLGGLQECLRAGGSRGSADGHFGSESGDDEV GDGDGLDRGLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	1.0	0.9441
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	4.5	0.9315
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	5.5	0.9149
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	5.5	0.9362
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	6.5	0.9352
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	9.2	0.9318
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	10.4	0.9195
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	11.2	0.9261
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10015663 [exp]	11.3	0.8536
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	14.0	0.9175

Compare expression of checked genes

Lus10012055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.