Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19090 358 / 2e-119 RNA-binding protein (.1) AT2G43970 198 / 4e-57 RNA-binding protein (.1.2) AT5G46250 162 / 2e-45 RNA-binding protein (.1.2.3) AT5G21160 51 / 2e-06 LA RNA-binding protein (.1.2.3) AT5G66100 49 / 7e-06 winged-helix DNA-binding transcription factor family protein (.1) AT4G35890 49 / 7e-06 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027925 [exp] 462 / 7e-162 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10025608 [exp] 208 / 7e-61 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 207 / 2e-60 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10023315 [exp] 167 / 6e-47 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 164 / 6e-46 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10038624 [exp] 65 / 8e-11 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10022135 [exp] 62 / 5e-10 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10011685 [exp] 56 / 7e-08 AT4G32720 382 / 1e-128 La protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106500 [exp] 408 / 2e-139 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.004G144700 [exp] 398 / 2e-135 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.007G144800 [exp] 209 / 3e-61 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 204 / 1e-59 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 158 / 6e-44 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.006G241800 [exp] 59 / 3e-09 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.018G037900 [exp] 52 / 4e-07 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.005G243600 [exp] 52 / 7e-07 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G109400 [exp] 49 / 5e-06 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.007G063600 [exp] 49 / 7e-06 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10012058 pacid=23161392 polypeptide=Lus10012058 locus=Lus10012058.g ID=Lus10012058.BGIv1.0 annot-version=v1.0 ATGGCCCAACTACCTCAACCGGAGAAGAAGAACACCGATCACAACCACGAACCTTCTTCTTCGTCTTCTTCTTCCTCCATGATCACCACTGCCATGATGA AGGAGAACGCCAAGCCTCCGCCAACCACCCCAACCGCCATGGCGGAGAGCAGCGCCGGTTGCAGTACGATCACCACCGGCGGATCCTCCGCTGCCGCCGC TCCTTTCAAATTCAACGCCCAGGCTCCCGAGTTCGTCCCCCGATCGCATGCCGCTTCGTCGGTGACAGCGGCAGCGGCGACCCCTGCTGTGTCGCCAATT TCCGGCTATTTCTACCCCTGCTTTCATTACCTAGGCGCCGCCGGCGGATCGGATTGGTTCTTCCTCGGCGATCAGGATGCTTCTTCGCCCGCTGCTGCTG CGGCGGCCGCGGCTTATCTGATCTCGAATCCGACACTCGGTGCGTTGCCGAATTCGGCCTCGAACAAGGATTCTTCCCTGGTTTTGAATGAAGATCTCCG TCAGAAAGTCGTCAAACAGGCGGAATACCAGTTCAGTGATATGAGTCTTCTTGCTAATGAATCTATGTCAAAGCATCTGTGCAAAGATCCTGAAGGTTAC GTGCCAATATCAGTTATTGCTTCCACGAAGAAAATGAAGTCTCTTACAAGTAACCATCATTTCATCACTCAGGCACTCAAGTCTTCTCCGAAACTCGTTG TGAATGAAGATGGAAGGAAGGTCAAACGTAAGATCCCATTCACAGAGAAAGATAGAGAAGAGCTGCAGTCTCGTACAGTGGTAGTGGAGAATTTGCCTGA TGACCACTCTCATCAAAACCTCGAGAAGATATTCGGTGTCGTTGGAAGTGTGAAAACCATCAGGATATGCCACCCTCAGGAATCGAACTCGTCTCGATCT AAGAGTGATTTCTTCATGAGCAATAAGCTTCATGCCCTAGTGGAGTTTGAGACACCGGATGTAGCTGAGAAAGCGGTTGAGAAACTGAATGATGAAAGGA ATTGGAGGAAAGGGCTTCGTGTCAGGTTGCTCTTCAGATGTTCGCCAAAATCTGTCCTGAAGAGTCGAAAATCAGAGTTCGATGGCATATTGGACGATGA GGAGGGACCATTCTCCGGTTCACTTGACGACATCTCCATACCACACATTACAGATCTCACTTCTGAGTCAAATGTGGACGAGAGCTCAGGATCGTCGAAG AAGGGTCCCGGAAGCGCAAGAGGACGAGGGAAAGGAAGAGGAAGTCGTTTGCAGAGCTACGGCAGTGGAGGGAGAGGCCTTCTGCTATCTCCATCTCCAC AAGCTATAAACAGCAGTGGTTCTCCATTTGAGGCTTCTGGTAGTAATAAACCATTTGGTGGTGGTTTCAACAAAGGACCAAGAATGCCTGATGGAACCAG GGGATTCACCATGGGGAGAGGAAAGCCTTTGGCTTCTCCTGTTGCTGCTGCTGCTGCAATTGTGGAATGA
AA sequence Show only first row Show all	>Lus10012058 pacid=23161392 polypeptide=Lus10012058 locus=Lus10012058.g ID=Lus10012058.BGIv1.0 annot-version=v1.0 MAQLPQPEKKNTDHNHEPSSSSSSSSMITTAMMKENAKPPPTTPTAMAESSAGCSTITTGGSSAAAAPFKFNAQAPEFVPRSHAASSVTAAAATPAVSPI SGYFYPCFHYLGAAGGSDWFFLGDQDASSPAAAAAAAAYLISNPTLGALPNSASNKDSSLVLNEDLRQKVVKQAEYQFSDMSLLANESMSKHLCKDPEGY VPISVIASTKKMKSLTSNHHFITQALKSSPKLVVNEDGRKVKRKIPFTEKDREELQSRTVVVENLPDDHSHQNLEKIFGVVGSVKTIRICHPQESNSSRS KSDFFMSNKLHALVEFETPDVAEKAVEKLNDERNWRKGLRVRLLFRCSPKSVLKSRKSEFDGILDDEEGPFSGSLDDISIPHITDLTSESNVDESSGSSK KGPGSARGRGKGRGSRLQSYGSGGRGLLLSPSPQAINSSGSPFEASGSNKPFGGGFNKGPRMPDGTRGFTMGRGKPLASPVAAAAAIVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19090			RNA-binding protein (.1)		Lus10012058 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025151 [exp]	14.6	0.6676
AT3G01490			Protein kinase superfamily pro...		Lus10030621 [exp]	15.1	0.6014
AT3G56800		ACAM-3, CAM3	calmodulin 3 (.1)		Lus10042597 [exp]	22.2	0.6541
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036617 [exp]	39.3	0.6264
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	43.6	0.6215
					Lus10010245 [exp]	45.1	0.5794
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	64.8	0.5861
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	70.0	0.5369
					Lus10013984 [exp]	72.5	0.5650
					Lus10008920 [exp]	74.0	0.5564

Compare expression of checked genes

Lus10012058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.