Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15790 527 / 0 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 175 / 4e-51 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 166 / 2e-50 ROC2 rotamase cyclophilin 2 (.1.2) AT4G38740 166 / 2e-50 ROC1 rotamase CYP 1 (.1) AT2G21130 166 / 4e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 162 / 8e-49 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G55920 159 / 9e-47 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 157 / 1e-46 ROC3 rotamase CYP 3 (.1.2) AT2G29960 157 / 2e-46 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 150 / 6e-44 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020992 [exp] 573 / 0 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 571 / 0 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 554 / 0 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 162 / 6e-49 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 161 / 2e-48 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10018746 [exp] 171 / 9e-48 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10022012 [exp] 160 / 9e-48 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10024831 [exp] 171 / 1e-47 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10017258 [exp] 159 / 1e-47 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106200 [exp] 548 / 0 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 536 / 0 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 523 / 0 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 508 / 0 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G168800 [exp] 165 / 8e-50 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 165 / 8e-50 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 162 / 7e-49 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G240200 [exp] 162 / 7e-49 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 162 / 1e-48 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G215800 [exp] 169 / 6e-47 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10012059 pacid=23161481 polypeptide=Lus10012059 locus=Lus10012059.g ID=Lus10012059.BGIv1.0 annot-version=v1.0 ATGGGCCGGACGAGATGTTTCTTCGACATAAGCATCGGCGGCGAGCTGGAAGGCCGGATTGTGATTGAGCTGTTCGACGACGTCGTTCCCAGAACTGCAG AGAATTTCAGAGCTCTCTGCACCGGAGAGAAAGGCGTCGGTCCCAATACCGGCGTCCCTCTCCATTTCAAGGGAAGCCGGTTTCATCGAGTCATCAAAGG GTTCATGGCGCAAGGAGGAGACATCTCAGCAGGGGACGGTACGGGAGGGGAATCCATCTACGGAACGAACTTCGAGGACGAGAACTTCGAGATGAAGCAC GAGCGGAAAGGAATACTGTCCATGGCGAATTCGGGCCCCAACACGAACGGTTCGCAGTTCTTCATCACAACCACTCGGACATCTCATTTGGACGGGAAGC ATGTCGTGTTCGGGAAAGTGGTGAAAGGAATGGGAGTCGTTAGGTCAGTCGAGCATGTCCCTACCGACAACGATGGAAACGTTCCGGTTCTTGATGTTGT GATTTCCAACTGCGGCGAGATCCCCGAAGGTGGAGATGACGGCATTACTAACTTCTTCAACGATGGGGACTTGTTCCCCGATTGGCCGGCTGATCTTAAT GACAGCCCCAAGGAGTTGTCGTGGTGGATTGATTCTGTCGTTTCGATTAAGGCCTTTGGTAATGACCATTTCAAGAAACAAGACTATAAGATGGCTCTGA GAAAGTATCGGAAGGCGCTTCGATATCTGGATATCTGTTGGGAGAAAGAAGGCATAGATGAAGAGAAGAGTTCAGCACTGAGGAAGACAAAGTCTCAGAT TTTCACTAACAGCTCTGCCAGCAAACTGAAAATGGGGGACATCAAAGGAGCATTACTAGACACCGATTTCGCAATGCGCGAGGGAGAAAACAACGTGAAA GCCCTATTTCGACAGGGACAGGCATACATGGCTCTTGGTGACATAGATTCTGCAGTCGAAAGCTTCAGACAGGCGTCGCAGTTGGAACCCAACGACGCTG GAATACGGAAAGAGCTACTTGCTGCTAAGAAAAAGATTGATGCGAGACATGAGGTGGAGAAAAACCAGTACAAGAAGATGTTCCAATAG
AA sequence Show only first row Show all	>Lus10012059 pacid=23161481 polypeptide=Lus10012059 locus=Lus10012059.g ID=Lus10012059.BGIv1.0 annot-version=v1.0 MGRTRCFFDISIGGELEGRIVIELFDDVVPRTAENFRALCTGEKGVGPNTGVPLHFKGSRFHRVIKGFMAQGGDISAGDGTGGESIYGTNFEDENFEMKH ERKGILSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVPTDNDGNVPVLDVVISNCGEIPEGGDDGITNFFNDGDLFPDWPADLN DSPKELSWWIDSVVSIKAFGNDHFKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSSALRKTKSQIFTNSSASKLKMGDIKGALLDTDFAMREGENNVK ALFRQGQAYMALGDIDSAVESFRQASQLEPNDAGIRKELLAAKKKIDARHEVEKNQYKKMFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	0	1
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	1.7	0.9404
AT1G69523			S-adenosyl-L-methionine-depend...		Lus10037162 [exp]	2.6	0.9160
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	2.8	0.9035
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	3.5	0.9355
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	3.7	0.9360
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	4.5	0.9266
					Lus10025897 [exp]	5.5	0.9187
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	7.2	0.9341
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	9.8	0.8883
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	9.9	0.8991

Compare expression of checked genes

Lus10012059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.