Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33945 427 / 2e-147 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027923 [exp] 714 / 0 AT4G33945 506 / 1e-177 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144100 [exp] 543 / 0 AT4G33945 543 / 0.0 ARM repeat superfamily protein (.1) Potri.009G106100 [exp] 540 / 0 AT4G33945 576 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012060 pacid=23161447 polypeptide=Lus10012060 locus=Lus10012060.g ID=Lus10012060.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCGAGCAAGAACATACGAACGATCTCCCAAGAAGCATTCGACGAGCTGGTGAAGGAGAACATGGACGATCTCGATATGGAGCCTTCCGAAG CTCTGGAAGACGCCGTACAATCCCTCACCCTCCAAGGCGTCGATCTCTCCGGGATTGTGAAGTGTGTTCCTGGTGAGGAGAGTGCGGTGATGAAGTGCGT TGCGAGATTGAATGATCTGGCGTCCAAATCGAGCCAGAACGATCTCGAGGAGATTGCTGGCTTGTTCGTGAAGCTGCTCGGCGAGTGTAGCGTCGGAGAA GGATCTGGAAATGCAACGGTGGCTGTGAGGAACGGCGGAGTGGAATCGGTTGTTGCTCTATGTTCGATGATTTCAATAAAGTCTTCCGAGCAGATTCTCG TGCTGGCTTTCAAAGCTCTATCGCTGTTACTTCACGACATTGAGAGTACGGAGAAGTTCCGTTCAAGTGGTGGACCAGCAGTTGTGGCTGGCTACTTGAA AGAAGGAAGTAAGAGCTTGGAGATCTTGAGTAGTGGCTTTAGCGTTGTTGCTCAGGCGGCAACTTCAAACGAAGTTGTGAAGCAGTCATTCATGGAGTTG GAAGTTGATGAGCTAATATTGCAAGTGCTGAATGAACAGAAGAAAGGGAGTGTGCATAGCTTGTATGATGCCATACGCATTCTTCTAACTCCAGACGACA ATCGAGTTCTTGCGTCCGAAGATGAAATATGCAAATCGATCGCTGAGAGTGGCGGCATTGATGTGATCCTGAAATGTATTGAAGACAGTGGTGAACATGG GCACATTGATGTTGCTCGAACGTGCTGCTCTTTGCTAGCTAAGTTGGCAGGAAGTGACTCGAACAAGACCGCCATTGTTGAGAAGAAGGGTATGGTTAAG CTAATCCAGTTATCATCAAGATTCTCTGACGACCCTTCTGTCTTGCTAGAGGTTATGCCGATCTTCACTGTTCTCTGCCTAAGATCTCCCGATAATGCCG CCCGTGCAATGGAAGCTGGAGCAGGCGACCTCGCGTTCCAAGCCATGGAGAATTGCCCTACAACGCCACTTTTGCAGCGTAATGCTTGCATGATGATCCG AAATCTCGCTGTCAGGAACCCTGAAAATCGAACTCTGCTACTCGGCCAAGGTATTGATAAGCTCATAAGACGAGCCAGGGAAAACCATGGAAGCTGCAAG GATGCAGCGACTGATGCTTTAAGGGACTTGGGACTCGATAACTACAAGTCATAA
AA sequence Show only first row Show all	>Lus10012060 pacid=23161447 polypeptide=Lus10012060 locus=Lus10012060.g ID=Lus10012060.BGIv1.0 annot-version=v1.0 MAPSSKNIRTISQEAFDELVKENMDDLDMEPSEALEDAVQSLTLQGVDLSGIVKCVPGEESAVMKCVARLNDLASKSSQNDLEEIAGLFVKLLGECSVGE GSGNATVAVRNGGVESVVALCSMISIKSSEQILVLAFKALSLLLHDIESTEKFRSSGGPAVVAGYLKEGSKSLEILSSGFSVVAQAATSNEVVKQSFMEL EVDELILQVLNEQKKGSVHSLYDAIRILLTPDDNRVLASEDEICKSIAESGGIDVILKCIEDSGEHGHIDVARTCCSLLAKLAGSDSNKTAIVEKKGMVK LIQLSSRFSDDPSVLLEVMPIFTVLCLRSPDNAARAMEAGAGDLAFQAMENCPTTPLLQRNACMMIRNLAVRNPENRTLLLGQGIDKLIRRARENHGSCK DAATDALRDLGLDNYKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	0	1
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	8.1	0.7603
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	9.1	0.7940
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	10.2	0.7392
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	12.1	0.7445
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	12.6	0.6977
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	20.2	0.7063
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	21.2	0.7417
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	21.8	0.6809
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	23.8	0.7218
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	32.4	0.7056

Compare expression of checked genes

Lus10012060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.