Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43650 274 / 7e-83 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) AT3G28230 71 / 6e-14 unknown protein AT1G07840 67 / 6e-12 Sas10/Utp3/C1D family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027922 [exp] 736 / 0 AT2G43650 385 / 1e-124 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Lus10029397 [exp] 64 / 1e-10 AT1G07840 248 / 7e-81 Sas10/Utp3/C1D family (.1.2.3) Lus10004194 [exp] 54 / 3e-07 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125800 [exp] 357 / 3e-114 AT2G43650 401 / 6e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Potri.005G152200 [exp] 74 / 4e-14 AT1G07840 298 / 9e-101 Sas10/Utp3/C1D family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09368 [flax] [poplar] Sas10 Sas10 C-terminal domain PF04000 [flax] [poplar] Sas10_Utp3 Sas10/Utp3/C1D family
Representative CDS sequence Show only first row Show all	>Lus10012061 pacid=23161420 polypeptide=Lus10012061 locus=Lus10012061.g ID=Lus10012061.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAAAAGTGGGAGCCAGAAGAAGAATGATGATAGGAATTTGAAGAACAGTGGTTCCCGCAGTAAATTTGCCGAGCCAGAAGACATGGATG ATGAAATTGATGTGTTTCACAAGCAAAGAGATATCGTTCCACTTGATTTGGATGATGATTTTGGAGATTCCAGTGATAGTGATGATGAACTCCCGGTTTT GGATGATAAGGTTCTATTTCTCTCCATGGCGAGACAACTGAAGTACTTGCGAGAAAAGTTTCCTGGAGTTGATGAAATGAAAGATGGTGAAGACGAAGAC GAGGAGCAACAAAATCATACATGGACTGGGAAAGGGATCTTACACGGTGGTGACAATTGTGATATTGAACTCGATTCAAGTGACGAGGAGGACCTTCAAG AAGAAGAGAATGAGGTTGTGAGGCTACAGAAGGAAAGAGCAAGATCATTGTCAGCAGCAGACCTTGGTATTGAAGATTTGAGTGGAAATGAGAGTGACCA AGAACTATCATTGGAGGCAAAGTCCGTGGGAAAGAAAATCTCAGGCAAAGTCGTTTCAACTGAAGAATCTGCTGACCCTAAACATTGGAATACATTATCT CGGGAAGAGCAAATGAACGTTGTATATAGTTCTGCTCCGGAGTTAGTCGGACTGCACTCTGAGCTGAATGATGCACTTGAACAGCTTGAAACAAGAATCA ATCCAGCTTTAGACAAGGCAAAAGAACTTGGAATTCCTATGGAGGGTGGGCTTCGCTTGTTGGAGACAAACCAACAAATCTTGATGGTATATTGCCAATA TATAACATTCTATCTTCTGCTCAAATCTGAAGGTCTTCCAGTTAATGACCATCCTGTCATCGAGCGGCTTGTAGAGATCAAAGGCTTATTGGATAAGATG AACCAACTGGGTGGAGATCTTCCAGCGAAGCTGGACGAGTTTCTGAAGAAGAACATAAGCCCTGAAGCTCTTCACAATTTCATTACCAAGGATGCTGCAG CAGTTTTGGAATCTGACAAATTGGCAAAGGAACATAATCCTCCTATTGTCTCTGCAGATACACTTGAAGTCTCTGAGCCACACCATAAAAATGTGGTGAA AGAAGTCAAAGAAGGAAGACGCAAGCGCAAGAACGATGACGACATTGGTGTTGAGGGTACAGAAATGTTGAGAGTCCGAGCAGCCCTGGAAGAAAAAATG AAGCAAAAGGGTGTCTTCAGTATAATTTCTCCAGATGCGCTTAATAAAGTTCAGAAGAAGCCTAAACTGGCAAATGGGAGGCTCGAGACACGTGATGATT TCGACGATGATACGGGTGATCTCGTCAACGGAAACCATGTTGTTACACCAGGAGGGGGCATGCAAACCAACTTATATTCAAAGAAGCTGAAGGTCATCTC CGGTGACGAAGATATACCCAGGAGAGACGATATTGGAGAAAGGAGGAGGAAACATGAAATGAGAGTGTTGGCAACTGCCGGAATAAAGTCGTCAGCCGGA GGCGATGATGAAGAACTCGAAAATGTACAAGATGACGACGATGACGACAACGTATCAGAGGAGGAAGGAATTGATTCTGCTGACGAAAGCTCGGAAGATG AAGAACTGAACGATGTTAAACCAGTTGCTGCGAAATCTGATAAAAGGAACGCAATGGCGGCAGCTGCTACGGTATCGGTGCCAGAAAAAGTGGTCGGAAA ACGACCAATCACTAATCCGATAAAGACGAACAGAGGGTTGACCCGACAGCGAAACAAGTCGAGAAAGAATCCGAGGAAGAATAACAGGTTGAAGCATGAA AAGGCAGAGAAGAGGAGGAAAGGGCAAGTCGTTAACATCAAGAAGCAATTGGGACCTTACGGAGGGGAGGTGTCTGGCATCAACCCAAGAATCAGTCGAA GCATTCGGATGTCGAATTAA
AA sequence Show only first row Show all	>Lus10012061 pacid=23161420 polypeptide=Lus10012061 locus=Lus10012061.g ID=Lus10012061.BGIv1.0 annot-version=v1.0 MGKKKSGSQKKNDDRNLKNSGSRSKFAEPEDMDDEIDVFHKQRDIVPLDLDDDFGDSSDSDDELPVLDDKVLFLSMARQLKYLREKFPGVDEMKDGEDED EEQQNHTWTGKGILHGGDNCDIELDSSDEEDLQEEENEVVRLQKERARSLSAADLGIEDLSGNESDQELSLEAKSVGKKISGKVVSTEESADPKHWNTLS REEQMNVVYSSAPELVGLHSELNDALEQLETRINPALDKAKELGIPMEGGLRLLETNQQILMVYCQYITFYLLLKSEGLPVNDHPVIERLVEIKGLLDKM NQLGGDLPAKLDEFLKKNISPEALHNFITKDAAAVLESDKLAKEHNPPIVSADTLEVSEPHHKNVVKEVKEGRRKRKNDDDIGVEGTEMLRVRAALEEKM KQKGVFSIISPDALNKVQKKPKLANGRLETRDDFDDDTGDLVNGNHVVTPGGGMQTNLYSKKLKVISGDEDIPRRDDIGERRRKHEMRVLATAGIKSSAG GDDEELENVQDDDDDDNVSEEEGIDSADESSEDEELNDVKPVAAKSDKRNAMAAAATVSVPEKVVGKRPITNPIKTNRGLTRQRNKSRKNPRKNNRLKHE KAEKRRKGQVVNIKKQLGPYGGEVSGINPRISRSIRMSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	0	1
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	2.2	0.8867
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	4.5	0.8582
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	8.9	0.8530
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	10.5	0.8254
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	11.2	0.8577
AT5G57120			unknown protein		Lus10001434 [exp]	11.3	0.8129
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	11.4	0.7531
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	12.1	0.8267
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	12.2	0.8310
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	14.5	0.7832

Compare expression of checked genes

Lus10012061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.