Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33940 201 / 2e-64 RING/U-box superfamily protein (.1) AT1G72175 124 / 3e-35 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 112 / 9e-31 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT5G48655 44 / 4e-05 RING/U-box superfamily protein (.1.2.3) AT3G07200 42 / 7e-05 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027921 [exp] 349 / 1e-122 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 222 / 2e-70 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1) Lus10020349 [exp] 141 / 1e-41 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10009529 [exp] 140 / 1e-41 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10004467 [exp] 42 / 0.0002 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1) Lus10022774 [exp] 41 / 0.0005 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143900 [exp] 196 / 2e-62 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.013G105400 [exp] 134 / 4e-39 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.019G078800 [exp] 133 / 1e-38 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012062 pacid=23161475 polypeptide=Lus10012062 locus=Lus10012062.g ID=Lus10012062.BGIv1.0 annot-version=v1.0 ATGGCGTCGGGATCGGCCGAGGAAGTCGGTACTGGTAACACTGCTCTCATTTCTGGCGGAAATGGCGGTGTAAGCGAGAGGATCGCGGTTGAGGCGGAAG AAGAAGAAGGAGAAGCGACGGAAGCTGACGAGTTTGTGGGAAACCCTAACGGTACGGGAAATGATGGCCCTCCTGTCGACGATTGCTGCCCGATCTGCTT CGGAGAGTTTACGGTCGCTTGTAAAGCTAATTGCGGTCATTGGTATTGCGGAGGCTGCATCCTCCAGTTCTGGAACTACTCTGCAGCATCAAGACCTTGC AAATGCCCGATGTGCTCTGCCAGCATTACCAATCTGACGGCAGAGGCATCCTTACTCAACCGACAAGAGAAGGAAGTTACGGAGGTTTTGCGCGAAGTTG AGAGGTACAATCGACTCTATGTTGGTGGTGCGCGGGGCCTTGTTCAGAAAGTGCGCGAATCACCATTGTTCATCAAACGAATTGTCATACGGATGATGGA TCCTGATCGGCCTGAGTACTTTCTTCAGGAAGCACGGCTCCTGGCTATGATAATGAGCACTCTCTACGCGTTCTCTCCATTCGAATTCATTCCAATAAAC GGTGCGGGGGTAGTGAGACTGTTTGACCATGTTGCAATCATAATCGTTCTCGGGCTGCGCCTCATTGGCCTCTACCGTAGGCGTAGGCTTAACCAGCGAG TTCGGCACATGGCTGCTGCTCAACCACTAGCTGAATGA
AA sequence Show only first row Show all	>Lus10012062 pacid=23161475 polypeptide=Lus10012062 locus=Lus10012062.g ID=Lus10012062.BGIv1.0 annot-version=v1.0 MASGSAEEVGTGNTALISGGNGGVSERIAVEAEEEEGEATEADEFVGNPNGTGNDGPPVDDCCPICFGEFTVACKANCGHWYCGGCILQFWNYSAASRPC KCPMCSASITNLTAEASLLNRQEKEVTEVLREVERYNRLYVGGARGLVQKVRESPLFIKRIVIRMMDPDRPEYFLQEARLLAMIMSTLYAFSPFEFIPIN GAGVVRLFDHVAIIIVLGLRLIGLYRRRRLNQRVRHMAAAQPLAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	1.4	0.9150
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	1.4	0.9164
					Lus10033310 [exp]	3.5	0.9128
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	5.3	0.8840
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	5.8	0.8507
AT1G16760			Protein kinase protein with ad...		Lus10009895 [exp]	6.8	0.8297
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	7.3	0.8741
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	7.4	0.8623
					Lus10020547 [exp]	9.5	0.8519
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	11.0	0.8621

Compare expression of checked genes

Lus10012062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.