Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72920 122 / 2e-33 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G36930 124 / 5e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72930 115 / 5e-32 TIR toll/interleukin-1 receptor-like (.1.2) AT1G72910 119 / 1e-31 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72940 119 / 2e-31 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72950 116 / 2e-30 Disease resistance protein (TIR-NBS class) (.1) AT5G17680 116 / 2e-29 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72900 113 / 2e-29 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G27180 111 / 1e-27 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72890 109 / 1e-27 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041606 [exp] 260 / 6e-87 AT5G36930 140 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026845 [exp] 256 / 2e-85 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 250 / 2e-82 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006929 [exp] 138 / 9e-40 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10041605 [exp] 135 / 2e-39 AT1G72940 93 / 3e-22 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) Lus10006928 [exp] 142 / 1e-38 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014671 [exp] 134 / 6e-38 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 136 / 3e-36 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10009500 [exp] 125 / 1e-35 AT1G72940 115 / 4e-30 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001314 [exp] 136 / 3e-39 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069200 [exp] 142 / 1e-38 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.012G135700 [exp] 141 / 6e-38 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 137 / 1e-37 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 137 / 1e-36 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 135 / 1e-36 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 137 / 2e-36 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 136 / 2e-36 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G096849 [exp] 127 / 2e-36 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069866 [exp] 127 / 3e-36 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10012063 pacid=23161451 polypeptide=Lus10012063 locus=Lus10012063.g ID=Lus10012063.BGIv1.0 annot-version=v1.0 ATGGCTTTCCGAGCATATCATGAGTCGACGGCGACCGCGCTACTAGTCCTGCTTTTGTTTGTCCATTTCATTACCCTGCCGGCGGACGCCAAATCGCATT CCTTCGCACCACCACCAAACACCCCTAGCCGCCGTCACGATGATCACCCCGCCAAAATCCGCCGCCCTCCTCCAAACACCAATTTCCCCGTTCCGCCGCA GTGGCGATACCACGTGTTCCTGAATTTCCGGGGACTCGACGTCCGCCACAGCTTCAGCGGCCATCTCTACCATGCGCTCTTACGGAGGAAGATCAAGGCC TTCCGCGACGATCGGGACCTCCCACGCGGAGAAAAGATCAGGGAGGCAATCCCACTCGCAATCGACGAATCGATGATGTCAATCGCGGTTCTGTCCAAAG GATACGCTTCCTCGGAATGGTGCTTGGACGAGTTGGTTAAGATGATGGACACCGCCCAGGTTTTCCCGGTGTTTTTCAAAGTGTCTCCCGACGATGTCTC CGATCAGTCATCGGGGTGCTACAAGGATGACTTTGATTCGCACAAGAGGAAGTTCAGCTATGAGCGAGTTGACAACTGGCGTCGCGCTCTCACTTCCGTT GCCGAAGTTACCGGCTGGGTTATCGGCCCTAATGACCACATTACTTTCTATCTCATACTAATAAAATGGTGGCATAATAGAATCGTAAATAGACTATATG TAGGATGGTGGCATAATGAGATTATAAATGGACGTAACAGTAACATAATTGATCTATAA
AA sequence Show only first row Show all	>Lus10012063 pacid=23161451 polypeptide=Lus10012063 locus=Lus10012063.g ID=Lus10012063.BGIv1.0 annot-version=v1.0 MAFRAYHESTATALLVLLLFVHFITLPADAKSHSFAPPPNTPSRRHDDHPAKIRRPPPNTNFPVPPQWRYHVFLNFRGLDVRHSFSGHLYHALLRRKIKA FRDDRDLPRGEKIREAIPLAIDESMMSIAVLSKGYASSEWCLDELVKMMDTAQVFPVFFKVSPDDVSDQSSGCYKDDFDSHKRKFSYERVDNWRRALTSV AEVTGWVIGPNDHITFYLILIKWWHNRIVNRLYVGWWHNEIINGRNSNIIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10012063 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	10.9	0.8401
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	27.3	0.7967
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10035629 [exp]	32.4	0.7783
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	36.6	0.7826
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	39.0	0.7720
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	64.5	0.7684
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	64.7	0.7538
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	73.5	0.7567
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	105.2	0.6975
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	129.9	0.6968

Compare expression of checked genes

Lus10012063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.