Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012064 pacid=23161499 polypeptide=Lus10012064 locus=Lus10012064.g ID=Lus10012064.BGIv1.0 annot-version=v1.0 ATGCTGGGTCGTCGTTGTAGAGGAAAGGTTCTGCTATGTGTTGCGATAAGCTTGGTTCTGTTGGTTACCTTATCTTCCAAGACTTTGGCCGCGGATCATC ATCAACGAGCCGTGCATCTTCTCAAATTCGAGCATGAACAGCTGGAGGTCGAGGAAGAGATTGACCATTATCATAAGAAGCATGAAGAAGACTTGGAACA ACTCAAGATTTCTGCGCGGGGAAGTAAGTCACGACAAGCCCATCATGCCGGAACTCCTCCGGAACCGAAACCGAAACCGAAACCGAAACCAACTCCTCCT GCTCCTCCAACAATCCTGATTCCTCCTCCTCCGCCACCACCGGCAAAGGGATGA
AA sequence Show only first row Show all	>Lus10012064 pacid=23161499 polypeptide=Lus10012064 locus=Lus10012064.g ID=Lus10012064.BGIv1.0 annot-version=v1.0 MLGRRCRGKVLLCVAISLVLLVTLSSKTLAADHHQRAVHLLKFEHEQLEVEEEIDHYHKKHEEDLEQLKISARGSKSRQAHHAGTPPEPKPKPKPKPTPP APPTILIPPPPPPPAKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012064 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	3.5	0.8743
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	6.0	0.8385
AT5G52390			PAR1 protein (.1)		Lus10012788 [exp]	8.0	0.8139
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	9.1	0.8723
AT1G69240		RHS9, ATMES15	ROOT HAIR SPECIFIC 9, ARABIDOP...		Lus10037068 [exp]	10.8	0.8077
					Lus10041663 [exp]	10.9	0.8477
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042468 [exp]	11.0	0.8556
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	13.0	0.8615
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	14.2	0.8664
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020491 [exp]	15.5	0.8335

Compare expression of checked genes

Lus10012064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.