Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 1006 / 0 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 345 / 5e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 326 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 319 / 9e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63130 303 / 4e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 310 / 1e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 306 / 1e-90 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 301 / 4e-90 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 299 / 2e-89 RPF2 rna processing factor 2 (.1) AT5G64320 300 / 5e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027914 [exp] 1519 / 0 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 1446 / 0 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 333 / 3e-101 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 333 / 7e-100 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027913 [exp] 313 / 1e-99 AT1G49590 278 / 5e-95 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10010410 [exp] 320 / 2e-94 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 316 / 4e-94 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 308 / 2e-92 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10006373 [exp] 308 / 2e-91 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105600 [exp] 1081 / 0 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 353 / 2e-108 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 335 / 5e-102 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 332 / 8e-98 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 323 / 2e-97 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 323 / 5e-97 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 322 / 7e-97 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 330 / 2e-96 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 322 / 2e-96 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 317 / 2e-96 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0361 [flax] [poplar] C2H2-zf PF06220 [flax] [poplar] zf-U1 U1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10012068 pacid=23161425 polypeptide=Lus10012068 locus=Lus10012068.g ID=Lus10012068.BGIv1.0 annot-version=v1.0 ATGCCTGTTCCGAACTCTCAGCTTTACCGGAGATTCTCATCCATCTCGTCGCCGGCGGCCGATGCTCTTCTAGCAGAGAGGGCTCTGCTCCTCCTCAAGC GCCACCCTTACCACCTGAATTCAATCTCCTCGGAGTTTACCCCTGAAGCAGCTTATCAATTACTCCTCAAATCCCAGGACGACCAAATCCTAACCCTAAA GTTCATCGACTGGGCACGGCCTCACGGGTTCTTCAACAAAAACCCCCGTTGCAAATGCCTGGCGATTCACATCCTGACAAGGTTCAAGCTTTACAAAACG GCACAGTCCCTCGCACAGGACATGGCCGTCTCCACCGCTGAGGAGGACGATTCAGGCAGGTTTGTGTTTCAGTGTCTGAAGGATACTTACTTTGTCTGCA ATTCGAGCTCTGCCGTGATCGATTTGGTGGTGAAGTCTTACTCTAGTTTGAACTTGATTGATAAGGCTAGGAACATTGTTAATTTAGCTAAAGCTAATGG ATTCATGCCCGGTGTTCTTTCATACAATGCGATTCTGGATTCGATAATCCGGTCCAGGAAGCCGTTTAGCTTGGCTGAAGAGGTTTACAGGGAGATGGTT GCTGGTAAGGTGTCGTTGAATGTCTATAGCTATAATATCTTGATTAGAGGGTTGTGTAGGGTTGGGAATTTGGAAACGGGGTTGAATCTATTTGATGAGA TGGAGAAGAATGGCTGCTTGCCTAATGTTGTTACGTACAATACGGTGATTGATAGTTACTGCAAGTTGAAGAGGATTGACGATGCATTCGGCTTGTTACG ATCGATGGCATTGAAAGGATTGGAACCGAATCTGTTTACTTTCAACATAGTTATTAATGGTTTGTGTCGGGAAGGAAGGATGAAGGAGACAGGAGAGATT CTAGCAGAGATGAAGCAGAAAGGTTATGTGCCTGATGAGGTTACTTACAATACATTGGTGAATGGATACTGCAAGGAGGGTAATTTTCACCAAGCTCTTG TGCTCCACGGGGAGATGTCGAACAATGGTTTGTCCCCTAACGTTGTTACCTTCACGTCTTTGATTAATAGCATGTGTCAGGCCGGGAATCTGAAGCGAGC GATGGAATTTTTCGATCAGATGCATATTAGAGGACTCTCCCCTAACGAGAGGACGTACACTACACTGATAAATGGGTTTTCGCAGCAAGGATATATGAAC GAGGCTCGAGAACTTGTGGACGAAATGAAAGGTAACGGATTTTTGCCATCGATCGTGACATTTAACACCCTAATAAATGGATATTGTGGTTTAGGAAGGA TGGAAGATGCCACGACGGTGTTTGAAGAAATGGAAGGGGTGGGGTTTTCACCAGATGTCGTCAGTTACAGCACTATCATATCTGGATTTTGCCAGAATCG AGAGCTGGACAGGGCGTTTCACGTGAAGAAGGAAATGGTTCAGAAAGGCATTCCATTGGATGCCATAACATATTCAGCATTTATTCAAGGTCTATGTGAA GAAAGGAAATTGATTGAGGCATTTGATCTGTTTCAAGAAATGCTGAATATGAAAGTACCTCCGGATCAAGTTACTTACACAACCTTGATTGATGCCTATT GTAAAGAAGGAGAGTTGAGCAAGGCACTTAACTTGCATGACGAAATGATACAGAAGGGGTTTCTCCCGGATGTCGTTACCTACAGTGTGCTAATCAACGG ACTCAACAAGCAAGCGCGTACTAAGGAAGCTAAGAGGCTATTGCTGAAGCTTTACTCTGATGAATCCGTCCCGGCTGATGTCATGTATAACGTCCTTACA GAAAACTGCAGCAGCTTGGAATTCAAGAGCGTGGCGGCTCTGATAAAGGGATTCTGTATAAAGGGTTTGATGGGGGAAGCAGATAGAGTGTTTGAATCGA TGATTGCAAGAAACCACAAGCCTGATGAATCAGTCTTCAACATCATCATACACGGTCATTGTAGATGGGGAAATGTTCAGAAGGCTTATGAACTGTATAC GGAAATGGTTCGATTCGGTTATGTTCCTCACACTGTGACTGTTATTGCTTTGGTTAAGGCGCTTTTCACTGAAGGGATGAACGATCAGTTGAACCTTGTC ATCAGTTACTTGCTGAGAAGCTGCAAGCTTAGTGATGGTGAGCTTTCTAAAGTACTTGTGGAAATCAATAACAATGAAGGGAATATGGACGTGGTTTTCG GTTTGCTTGAATCGATGGCCAAGGATGGCCTGCTTCCGAAGAGTGGGGCCTCTACCAACGACAGGTATTGGGTGAGCCAAGGGAAGAAATGGTGCGATTT CTGCAAAATCTTCATAGCGAACAATCCTTCGAGCATAAGGAACCACGATTTGGGCCAGAAGCACAAGGACAATGTCTCCCAGCGGCTTGCTGCTATGCGG AAGGACAACATTGCCAAGGATAAGGCCGAGAAGGCAGCCGCCTCTGCTCTTGAGCAGATTGAAGCTAAAGCTAAGCGTAGCTATCAAAAGGATGTGGCGA ATTTGAAGGAGGCTGGTGATGCACGGGCACTGGATTTTCAAGAAGACAGCAAGGAGAAATGGGATTACGACAGCACTACAGGCTACTACTACAACTCGAT AAATGGGCTACACTACGACTCAAACTCGGGCTTTTACTATTCTGATTCCATAGGCAAGTGGGTAACGCAACAGGAGGCATATGCTGCCGTCAAAGCTTCT TCGGATGGAAAGCTCAAAGACTCGAGTCTGAGGAAACCCTCCGTGCCAACTGTTCAATCGACAAGTGGGCCGCCACCTGGTCCAGTCGTTTCGGCATCCT TGAACCCCACGAGATCCGTCAAAGGTGCAGCTTCAAAAGTTGTCGTGGTCAACAAGAGAAAGAGAGACGAGAAGAAGCCAAAGGGTTTGACCGAAGAAGA CAAAGCTGCACTCAAAGCTAGGGAGGCTGCAAAGAAGAGAGTCGAAGAAAGGGAGAAAGGACTCCTCGGCCTTTACAAGCGATGA
AA sequence Show only first row Show all	>Lus10012068 pacid=23161425 polypeptide=Lus10012068 locus=Lus10012068.g ID=Lus10012068.BGIv1.0 annot-version=v1.0 MPVPNSQLYRRFSSISSPAADALLAERALLLLKRHPYHLNSISSEFTPEAAYQLLLKSQDDQILTLKFIDWARPHGFFNKNPRCKCLAIHILTRFKLYKT AQSLAQDMAVSTAEEDDSGRFVFQCLKDTYFVCNSSSAVIDLVVKSYSSLNLIDKARNIVNLAKANGFMPGVLSYNAILDSIIRSRKPFSLAEEVYREMV AGKVSLNVYSYNILIRGLCRVGNLETGLNLFDEMEKNGCLPNVVTYNTVIDSYCKLKRIDDAFGLLRSMALKGLEPNLFTFNIVINGLCREGRMKETGEI LAEMKQKGYVPDEVTYNTLVNGYCKEGNFHQALVLHGEMSNNGLSPNVVTFTSLINSMCQAGNLKRAMEFFDQMHIRGLSPNERTYTTLINGFSQQGYMN EARELVDEMKGNGFLPSIVTFNTLINGYCGLGRMEDATTVFEEMEGVGFSPDVVSYSTIISGFCQNRELDRAFHVKKEMVQKGIPLDAITYSAFIQGLCE ERKLIEAFDLFQEMLNMKVPPDQVTYTTLIDAYCKEGELSKALNLHDEMIQKGFLPDVVTYSVLINGLNKQARTKEAKRLLLKLYSDESVPADVMYNVLT ENCSSLEFKSVAALIKGFCIKGLMGEADRVFESMIARNHKPDESVFNIIIHGHCRWGNVQKAYELYTEMVRFGYVPHTVTVIALVKALFTEGMNDQLNLV ISYLLRSCKLSDGELSKVLVEINNNEGNMDVVFGLLESMAKDGLLPKSGASTNDRYWVSQGKKWCDFCKIFIANNPSSIRNHDLGQKHKDNVSQRLAAMR KDNIAKDKAEKAAASALEQIEAKAKRSYQKDVANLKEAGDARALDFQEDSKEKWDYDSTTGYYYNSINGLHYDSNSGFYYSDSIGKWVTQQEAYAAVKAS SDGKLKDSSLRKPSVPTVQSTSGPPPGPVVSASLNPTRSVKGAASKVVVVNKRKRDEKKPKGLTEEDKAALKAREAAKKRVEEREKGLLGLYKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10012068 [exp]	0	1
AT1G74790			catalytics (.1)		Lus10033116 [exp]	11.1	0.8851
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	12.1	0.8849
AT5G37480			unknown protein		Lus10013637 [exp]	12.8	0.8846
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	13.9	0.8824
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	16.3	0.8722
AT1G67420			Zn-dependent exopeptidases sup...		Lus10037015 [exp]	18.9	0.8484
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	21.5	0.8654
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	24.2	0.8559
AT5G38720			unknown protein		Lus10023232 [exp]	31.2	0.8521
					Lus10015758 [exp]	32.7	0.8700

Compare expression of checked genes

Lus10012068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.