Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15760 161 / 3e-47 Protein of unknown function (DUF1645) (.1) AT3G62630 77 / 1e-15 Protein of unknown function (DUF1645) (.1) AT2G26530 56 / 7e-09 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT3G27880 49 / 2e-06 Protein of unknown function (DUF1645) (.1) AT5G62770 42 / 0.0002 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027912 [exp] 508 / 0 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 226 / 1e-71 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10014025 [exp] 224 / 4e-71 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10021757 [exp] 89 / 1e-19 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032766 [exp] 86 / 1e-18 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 79 / 2e-16 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 77 / 5e-16 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10020690 [exp] 77 / 1e-15 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 76 / 4e-15 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143500 [exp] 178 / 3e-53 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 166 / 1e-48 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.002G128500 [exp] 101 / 3e-24 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.014G034900 [exp] 99 / 3e-23 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.005G019600 [exp] 77 / 2e-15 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 73 / 3e-14 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 43 / 0.0002 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10012069 pacid=23161465 polypeptide=Lus10012069 locus=Lus10012069.g ID=Lus10012069.BGIv1.0 annot-version=v1.0 ATGGAGGTGGCCATACCAACTCCGGCGACGGAATTTAACTTCGACAGCTCTTGCTCTTCCCCTTACCTCACCGCTCCGTCCAGTCCTCTGCCGTTCGGCT CCACCGCCGCCGGCAACAACTCCTTCTTCAGCGCCCCTACTTCCCCTACTCCGACCACCGCCGACAGACCTTCCAATTCCGACTTCGAATTCGACTTCGG CGGCCAAATTTCCAGATCCTCCTTCTCTGCAGCCGACGAGCTCTTCCACTGCGGCAAGATCCTCCCCCTGAGATCCCCTCCCGATTCCGATTTCACCACT TCTCCGAAGAAGGTTAGGGATTTCGATTTCGAAGAACAGCAGTTGGAGGATCGAGGAAGAGAATGGAGGATTTTCACTTCCTGCTCTTCCTACAATTTCG ACTCCGATGTCAACTCCTCCTCCGCCGCCTCATCCGGCCGGCGTGGGACCACCAGATCGCTCCCGCCGATGAGGATCTCCGACGTTATGTCGGAGCAGGA TGATGACGACTACGGCTCGGAAACCGGAGGGAAAACAAAGCAGTCGTACGCGGCGGCGTTTCTGTCGGCGGTGAAGGGAGGTGGAGGGCGGAACAAGAAG TGGAGGATTAGGGACTTTTTTCTGTTCAGAAGCGCGTCGGAAGGGAGGGCGACGAGCTCGGAGCAGCTTATGGCGGCGAAGTACGCGGTTCTGTCGAGGA GGAAGTCTCTGCCACCGTCGCCGGCGGCGGAGAATGTCGATAGTGTCGGGTCGCGGAGGCTGAGGCAGTCGGCGGCGGCGGTATCGGCGCACGAAATGCA TTATACGGTGAACAGAGCGGCGGCAGAGGAAATGAAGAGGAAAACTTATCTGCCGTATAAGCAAGGGTTGTTGGGTTGCTTGGGGTTCAATCCGGTTGGA CCGGACATCTCGAGAGGCATTGGATCGTTGACACGTGGATGA
AA sequence Show only first row Show all	>Lus10012069 pacid=23161465 polypeptide=Lus10012069 locus=Lus10012069.g ID=Lus10012069.BGIv1.0 annot-version=v1.0 MEVAIPTPATEFNFDSSCSSPYLTAPSSPLPFGSTAAGNNSFFSAPTSPTPTTADRPSNSDFEFDFGGQISRSSFSAADELFHCGKILPLRSPPDSDFTT SPKKVRDFDFEEQQLEDRGREWRIFTSCSSYNFDSDVNSSSAASSGRRGTTRSLPPMRISDVMSEQDDDDYGSETGGKTKQSYAAAFLSAVKGGGGRNKK WRIRDFFLFRSASEGRATSSEQLMAAKYAVLSRRKSLPPSPAAENVDSVGSRRLRQSAAAVSAHEMHYTVNRAAAEEMKRKTYLPYKQGLLGCLGFNPVG PDISRGIGSLTRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15760			Protein of unknown function (D...		Lus10012069 [exp]	0	1
					Lus10005523 [exp]	7.5	0.7774
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	9.3	0.8000
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	25.9	0.6963
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	26.5	0.7240
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	28.4	0.6952
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	31.7	0.7007
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	37.8	0.6806
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	41.1	0.6557
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	52.3	0.7015
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	61.7	0.6610

Compare expression of checked genes

Lus10012069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.