Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 445 / 2e-155 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 441 / 7e-154 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 397 / 1e-136 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 394 / 2e-135 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 354 / 2e-120 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 352 / 4e-119 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 348 / 9e-118 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 335 / 3e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G54080 144 / 7e-39 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 138 / 1e-36 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012071 [exp] 576 / 0 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10027911 [exp] 535 / 0 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 484 / 2e-172 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 474 / 3e-168 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10021754 [exp] 432 / 3e-150 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 360 / 3e-122 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 358 / 2e-121 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 355 / 8e-121 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 281 / 4e-91 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143400 [exp] 507 / 1e-179 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 504 / 2e-178 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 454 / 7e-159 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 440 / 1e-153 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 374 / 1e-127 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 365 / 2e-124 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 365 / 6e-124 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 363 / 2e-123 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G139300 [exp] 139 / 4e-37 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 139 / 4e-37 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012070 pacid=23161431 polypeptide=Lus10012070 locus=Lus10012070.g ID=Lus10012070.BGIv1.0 annot-version=v1.0 ATGCAGTACCCGGCTGCAGCCATGGCGATGATGCAGCAGCAGCAACAGATGATGATGATGTACCCTCCTCCGCCGCAGCACCACCCTCACCACCCGGCTT ACGTGGCGGCTTACTACCACCAGCAGCAACAGTATCAGAAGCAGCAGCATCAGCAGCCGGTGTATCAGAAGCTGATTCATGGATCGGAGGATGCCAAGAC GGTTTGGATTGGTGATTTGCTCGTCTGGATGGACGAGACTTACCTCCACAATTGCTTCTCCCCCACCGGCGAGGTTTCATCTGTTAAGGTTATAAGGAAT AAGCAGACCGGTCAATCCGAAGGGTATGGTTTCGTCGAGTTCTACTCACACTCAGCAGCAGAGAAAGTTCTACAAACCTACAGTGGATGTGTAATGCCCA ACTCGGACCAGCCTTTCCGTCTGAACTGGGCAACCTTTGCTGGCGAAAGACGACAACAAGAACCGAATACTGATCTGTCTATATTCGTCGGTGATTTGGC TGCAGATGTGACAGATTCTTTGTTGCAGGAGACCTTTGCTGGGAAGTATCCTTCAGTTAAGGGAGCGAAAGTAGTTATCGACTCCAATACTGGCAGGACG AAAGGCTATGGCTTTGTTAGGTTTGGAGATGAAAACGAGAGGTCTCGAGCCATGACAGAGATGAACGGTGTTTATTGCTCGACCAGGCCCATGCGGATAG GTGTTGCCACTCCCAAAAAGTCTTCCCCTTTCCAACAACAATACTCTTCACAAGGAAATGGTACTTCAGCTCAGGGTTCCAATGGTGATGTCGATTCCAA TAACACAACTATATTCGTAGGAGGAATTGACTCTGATGTTACCGAGGAAGATCTCAGGCAGCCATTCGGTCAGTTTGGTGATGTTGTATCTGTGAAAATA CCCGTTGGGAAAGGCTGTGGTTTTGTGCAATTCGCCAACAGAAAAGATGCAGAGGAAGCTCTTCAGGGTTTGAATGGCACTGTCATTGGGAAGCAGACGG TTCGCCTTTCATGGGGCCGTAGTCCTGCAAACAAGCAGTGGAGAGGCGATCACGGGAACCAGTGGAACAATGGAGGAGGCTACTACGGAGGTCAAGGCTA TGGTGGTGCGTATGCATACACCGCAGCTCAGCCGAATCAGGACAATGGAACGTACGCTGCAGCTGCAGCCTCGGGAGCTTCGTAA
AA sequence Show only first row Show all	>Lus10012070 pacid=23161431 polypeptide=Lus10012070 locus=Lus10012070.g ID=Lus10012070.BGIv1.0 annot-version=v1.0 MQYPAAAMAMMQQQQQMMMMYPPPPQHHPHHPAYVAAYYHQQQQYQKQQHQQPVYQKLIHGSEDAKTVWIGDLLVWMDETYLHNCFSPTGEVSSVKVIRN KQTGQSEGYGFVEFYSHSAAEKVLQTYSGCVMPNSDQPFRLNWATFAGERRQQEPNTDLSIFVGDLAADVTDSLLQETFAGKYPSVKGAKVVIDSNTGRT KGYGFVRFGDENERSRAMTEMNGVYCSTRPMRIGVATPKKSSPFQQQYSSQGNGTSAQGSNGDVDSNNTTIFVGGIDSDVTEEDLRQPFGQFGDVVSVKI PVGKGCGFVQFANRKDAEEALQGLNGTVIGKQTVRLSWGRSPANKQWRGDHGNQWNNGGGYYGGQGYGGAYAYTAAQPNQDNGTYAAAAASGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	0	1
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	2.6	0.9041
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	3.9	0.8943
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020117 [exp]	6.3	0.8881
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	8.9	0.8818
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	9.4	0.8824
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	11.0	0.8988
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10038898 [exp]	11.1	0.8560
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	16.2	0.8753
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	17.8	0.8315
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041933 [exp]	24.9	0.8250

Compare expression of checked genes

Lus10012070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.