Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 422 / 2e-147 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 417 / 2e-145 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 379 / 2e-130 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 375 / 3e-129 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 335 / 7e-114 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 335 / 2e-113 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 328 / 3e-111 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 314 / 3e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G54080 139 / 7e-38 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 130 / 1e-34 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012070 [exp] 578 / 0 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 535 / 0 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 485 / 3e-174 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 474 / 1e-169 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10021754 [exp] 414 / 5e-144 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 339 / 4e-115 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 337 / 2e-114 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 335 / 3e-114 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 259 / 2e-83 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143400 [exp] 482 / 3e-171 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 479 / 5e-170 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 432 / 7e-152 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 419 / 1e-146 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 352 / 2e-120 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 347 / 1e-118 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 346 / 7e-118 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 343 / 8e-117 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G166100 [exp] 133 / 2e-35 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 132 / 2e-35 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012071 pacid=23161430 polypeptide=Lus10012071 locus=Lus10012071.g ID=Lus10012071.BGIv1.0 annot-version=v1.0 ATGGACGAGACTTACCTCCACAATTGCTTCTCCCCCACCGGCGAGGTTTCATCTGTTAAGGTTATAAGGAATAAGCAGACCGGTCAATCCGAAGGGTATG GTTTCGTCGAGTTCTACTCACACTCAGCAGCAGAGAAAGTTCTACAAACCTACAGTGGATGTATAATGCCCAACTCGGACCAGCCTTTCCGTCTGAACTG GGCAACCTTTGCTGGCGAAAGACGACAACAAGAACCGAATACTGATCTGTCTATATTCGTCGGTGATTTGGCTGCAGATGTGACAGATTCTTTGTTGCAG GAGACCTTTGCTGGGAAGTATCCTTCAGTTAAGGGAGCGAAAGTAGTTATCGACTCCAATACTGGCAGGACGAAAGGCTATGGCTTTGTTAGGTTTGGAG ATGAAAACGAGAGGTCTCGAGCCATGACAGAGATGAACGGTGTTTATTGCTCGACCAGGCCCATGCGGATAGGTGTTGCCACTCCCAAAAAGTCTTCCCC TTTCCAACAACAATACTCTTCACAAGGAAATGGTACTTCAGCTCAGGGTTCCAATGGTGATGTCGATTCCAATAACACAACTATATTCGTAGGAGGAATT GACTCTGATGTTACCGAGGAAGATCTCAGGCAGCCATTCGGTCAGTTTGGTGATGTTGTATCTGTGAAAATACCCGTTGGGAAAGGCTGTGGTTTTGTGC AATTCGCCAACAGAAAAGATGCAGAGGAAGCTCTTCAGGGTTTGAATGGCACTGTCATTGGGAAGCAGACGGTTCGCCTTTCATGGGGCCGTAGTCCTGC AAACAAGCAGTGGAGAGGCGATCACGGGAACCAGTGGAACAATGGAGGAGGCTACTACGGAGGTCAAGGCTATGGTGGTGCGTATGCATACACCGCAGCT CAGCCGAATCAGGACAATGGAACGTACGCTGCAGCTGCAGCCTCGGGAGCTTCGTAA
AA sequence Show only first row Show all	>Lus10012071 pacid=23161430 polypeptide=Lus10012071 locus=Lus10012071.g ID=Lus10012071.BGIv1.0 annot-version=v1.0 MDETYLHNCFSPTGEVSSVKVIRNKQTGQSEGYGFVEFYSHSAAEKVLQTYSGCIMPNSDQPFRLNWATFAGERRQQEPNTDLSIFVGDLAADVTDSLLQ ETFAGKYPSVKGAKVVIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSTRPMRIGVATPKKSSPFQQQYSSQGNGTSAQGSNGDVDSNNTTIFVGGI DSDVTEEDLRQPFGQFGDVVSVKIPVGKGCGFVQFANRKDAEEALQGLNGTVIGKQTVRLSWGRSPANKQWRGDHGNQWNNGGGYYGGQGYGGAYAYTAA QPNQDNGTYAAAAASGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	0	1
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Lus10038663 [exp]	2.0	0.8372
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015021 [exp]	3.5	0.8259
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	5.3	0.8687
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	5.7	0.8719
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006175 [exp]	8.8	0.8336
AT5G41190			unknown protein		Lus10008488 [exp]	12.0	0.8151
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	13.5	0.8331
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	14.1	0.8278
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	14.5	0.8467
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	18.0	0.8244

Compare expression of checked genes

Lus10012071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.