Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15730 490 / 2e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 487 / 3e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50620 427 / 1e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027910 [exp] 622 / 0 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 399 / 2e-139 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 398 / 2e-139 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009348 [exp] 394 / 7e-138 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002971 [exp] 394 / 1e-137 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105200 [exp] 540 / 0 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G143300 [exp] 523 / 0 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 454 / 2e-161 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G042100 [exp] 446 / 5e-158 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 436 / 3e-154 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF09037 [flax] [poplar] Sulphotransf Stf0 sulphotransferase
Representative CDS sequence Show only first row Show all	>Lus10012072 pacid=23161416 polypeptide=Lus10012072 locus=Lus10012072.g ID=Lus10012072.BGIv1.0 annot-version=v1.0 ATGGCAGCTGACGATCTCTTCTGCTGCTTCTCTAAGGATTCCATCCTTGGGAAGGCACCAAAGAAGTCTACATTACTATTGAGAATGGTTGTTGTGGTAC TTATAGTATTCAGCATTGTGTACATATCATCAGTCTGTCTCAAACAAGTCGGAATCGCTAGCAACCCTATCATCATCGACGTCATGGCAAAGAAGCCGTG TCCGGTCCCTAATATCGAGCCGTGGGAGATTCCTTACGTTCATTACCCGAAACCGGAGATGTATAGCAGGGCAGAATGCGAATGCAATCCGGTCCGGTAC TTTGCCATTCTGTCGATGCAGAGGTCTGGGAGCGGATGGTTCGAGACGCTGTTGAACAATCATACCAATGTGAGCTCAAACGGGGAGATATTCTCTGTTA AGGTGAGGAGGAGGAATGTTTCGACCATCGTCGAGACTTTGGATAGGGTCTATAACTTGGACTGGTTGAGTAGCGCATCCAAGAATGAGTGCACGGCTGC TGTCGGGTTCAAATGGATGCTTAACCAGGGTGTGATGCAACATCACGAAGAAGTCGTGGAGTACTTCAGAACACGAGGGGTTTCCGCCATCTTCCTATTC AGGAGGAACCTTCTACGAAGGATGGTCTCCGTGCTTGCCAACGAATACGATCGACAAGCAAAGCTGTTGAATGGAACTCACAAGTCTCATGTCCATTCGC CTCATGAGGCAGAGATACTTGCTAGGTACAAGCCCTACATGAATGCGACGTTATTGATTCACAACCTAAAGCAAGTAGAGAACACGACCGCGCAAGCCTT GGAATACTTCAAAGGCACCCGACACATGGTTCTTTACTACGAGGACATCGTGCAGAACCGCACTAAACTATCTGGGGTCCTGGACTTCCTCAAGGTTCCT CAGAGAGAGCTGAAGAGCCGGCAGGTGAAGATTCACAAAGGATCGTTATCAAATCAGGTTCAGAACTGGGAGGAAGTTCAAGCAGCGCTACAAGGGACCG AATATCAATCCTTCCTCGACATGGATTACTGA
AA sequence Show only first row Show all	>Lus10012072 pacid=23161416 polypeptide=Lus10012072 locus=Lus10012072.g ID=Lus10012072.BGIv1.0 annot-version=v1.0 MAADDLFCCFSKDSILGKAPKKSTLLLRMVVVVLIVFSIVYISSVCLKQVGIASNPIIIDVMAKKPCPVPNIEPWEIPYVHYPKPEMYSRAECECNPVRY FAILSMQRSGSGWFETLLNNHTNVSSNGEIFSVKVRRRNVSTIVETLDRVYNLDWLSSASKNECTAAVGFKWMLNQGVMQHHEEVVEYFRTRGVSAIFLF RRNLLRRMVSVLANEYDRQAKLLNGTHKSHVHSPHEAEILARYKPYMNATLLIHNLKQVENTTAQALEYFKGTRHMVLYYEDIVQNRTKLSGVLDFLKVP QRELKSRQVKIHKGSLSNQVQNWEEVQAALQGTEYQSFLDMDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	1.0	0.8633
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	3.0	0.8457
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	4.5	0.8362
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	5.0	0.8362
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	6.0	0.8506
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	8.5	0.8336
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	10.5	0.7938
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	14.5	0.8206
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	15.2	0.8085
AT1G35780			unknown protein		Lus10033456 [exp]	17.9	0.7764

Compare expression of checked genes

Lus10012072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.