Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48700 276 / 1e-91 ATCXE13 carboxyesterase 13 (.1) AT3G48690 271 / 5e-90 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 264 / 3e-87 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 260 / 1e-85 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 255 / 2e-83 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 234 / 3e-75 ATCXE5 carboxyesterase 5 (.1) AT1G49650 229 / 8e-73 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 224 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 149 / 5e-42 ATCXE17 carboxyesterase 17 (.1) AT1G68620 126 / 9e-34 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027909 [exp] 536 / 0 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10019882 [exp] 316 / 3e-107 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 280 / 2e-93 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021745 [exp] 245 / 1e-79 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 246 / 4e-79 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 240 / 1e-77 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 232 / 3e-74 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10019884 [exp] 215 / 1e-68 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 183 / 2e-54 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104000 [exp] 328 / 5e-112 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 327 / 9e-112 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 320 / 4e-109 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 318 / 2e-108 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104400 [exp] 311 / 2e-105 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104900 [exp] 306 / 4e-103 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 264 / 4e-87 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032800 [exp] 261 / 7e-86 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 257 / 1e-84 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G105000 [exp] 237 / 9e-77 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10012073 pacid=23161436 polypeptide=Lus10012073 locus=Lus10012073.g ID=Lus10012073.BGIv1.0 annot-version=v1.0 ATGGAATCTTTAGCCTCCGCCCCCGACGACTCAATCTCCGACGACGAACTCCCGAGAGAGTATCCTCCGTTCCTCCGGATATACAAAGACGGCACAGTCG AGCGCCTGGTCGGCACCAAAACCGTCCCGCCCGACCCAACTCCCGCCGTCCAATCCAAAGACGTTACCTACTCCAACGAACTCAACCTCCGCTCTCGAAT CTACCTTCCTAAATCACAGATCCACAACAGCAAGAAGAAGCTTCCTGTCTTAGTCTACTACCACGGCGGCGCGTTCTTCGTGGAATCAGCTTTCTCCCCT ACCTACCACACATACCTCAACTCCATAGTCGCGGCGGCGAACGTGATCGCTGTCTCAGTGGACTACCGCCGCGCTCCGGAGCATCCGTTGCCGATCGCCT ACGACGACTCCTGGTCAGCTCTGGAGTGGATCGGGTCGCACAAATCCGGATCCGGATCCGAGGAGTGGCTCAACGAGCACGCGGACCTAGACTCCGTGTT CGTAGCAGGGGACAGCGCGGGAGCGAACATAGCGCACCGGGTGACGATCCGGTTCGGGATCGACCCGATCGGAGGGATCGGGCTGACCGGACTGATCCTG ATCCATCCTTACTTCTGGGGGAACGATCCGATCGGGGAAGAGGAGGAGGAGATGGAGTTCCGGGAAGGCGCCCTGGAGTTCTGGAAGCTGGCCTGTCCAG GGACGAGCGGCGGGGATGATCCGTGGGTGAATCCGGCGGCGGATTCGGATCTGTGGAGGCTAGGGTGCGGGAAAGTGATGGTGGCGGTGGCGGAGAAGGA TTTTTTGAAGGAGAGAGGGAAGCTTTACTGTGAGGTGTTGGAGCAGAGTGGGTGGAAAGGAGAGGTTGAGATTTTGGAAGCCAAAGGTGAAGGCCATGTT TTCCATTTGATGGATGGTGAGTGTGATAACGCTGTTGCTATGAGGGAGAAGATCTGTTGCTTCATCCATGGTTAG
AA sequence Show only first row Show all	>Lus10012073 pacid=23161436 polypeptide=Lus10012073 locus=Lus10012073.g ID=Lus10012073.BGIv1.0 annot-version=v1.0 MESLASAPDDSISDDELPREYPPFLRIYKDGTVERLVGTKTVPPDPTPAVQSKDVTYSNELNLRSRIYLPKSQIHNSKKKLPVLVYYHGGAFFVESAFSP TYHTYLNSIVAAANVIAVSVDYRRAPEHPLPIAYDDSWSALEWIGSHKSGSGSEEWLNEHADLDSVFVAGDSAGANIAHRVTIRFGIDPIGGIGLTGLIL IHPYFWGNDPIGEEEEEMEFREGALEFWKLACPGTSGGDDPWVNPAADSDLWRLGCGKVMVAVAEKDFLKERGKLYCEVLEQSGWKGEVEILEAKGEGHV FHLMDGECDNAVAMREKICCFIHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	0	1
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	3.0	0.9543
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	4.0	0.9423
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	4.4	0.9155
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	6.3	0.9454
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	6.7	0.9319
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	7.1	0.9210
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	7.7	0.9443
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	8.9	0.9408
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	9.5	0.9206
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	10.4	0.9388

Compare expression of checked genes

Lus10012073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.