Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44530 602 / 0 Phosphoribosyltransferase family protein (.1.2) AT2G35390 599 / 0 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 593 / 0 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT1G10700 82 / 6e-17 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 71 / 2e-13 Phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027908 [exp] 686 / 0 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 594 / 0 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 567 / 0 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10010935 [exp] 81 / 1e-16 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 80 / 2e-16 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 79 / 3e-16 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10020768 [exp] 79 / 3e-16 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10036849 [exp] 78 / 1e-15 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10006202 [exp] 77 / 3e-15 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179600 [exp] 651 / 0 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.003G088400 [exp] 634 / 0 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.001G145700 [exp] 627 / 0 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.010G045000 [exp] 79 / 9e-16 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.002G059700 [exp] 77 / 2e-15 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.005G202100 [exp] 76 / 4e-15 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10012074 pacid=23161407 polypeptide=Lus10012074 locus=Lus10012074.g ID=Lus10012074.BGIv1.0 annot-version=v1.0 ATGGTAACTTATGTCTGGACGTGTTTCCTAAAGAGATGTCATTTGGCGGAGCCGCTCAAGTTTGTGAACGGGAAGCCATCCATCCCAGTCCTTCCTAGTC GTGAATATTCACTCCCAAGCTTTGTAGCTTCCGGACCTCAAAGAGGCAGCATTGTTAATAAGCACGATACAAAGCTTCGAATATTCTCTGGCACGGCTAA TCCTTCTCTCTCTCAGGAAATTGCGTGTTACATGGGCTTAGAACTCGGAAAAATTGACATAAAACGTTTTGCTGATGGTGAGATCTATATCCAACTCCAA GAAAGTGTACGGGGCTGTGATGTATTTCTTGTGCAACCCACATGTCCTCCTGCAAATGAGAATCTTATGGAACTGTTGGTAATGATTGATGCTTGTCGGA GGGCATCGGCCAAAAATATTACTGCGGTGATTCCATATTTTGGGTATGCTAGAGCTGACAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAACTCGT GGCAAATTTGATCACAGAAGCAGGTGCCAACCGCGTGCTTGCTTGTGATCTCCATTCAGGGCAGTCTATGGGCTATTTTGACATCCCTGTAGACCACGTG TATGGCCAGCCTGTGATATTAGACTACCTTGCTAGCAAGAGGATATGTTCGGATGACTTGGTAGTGGTATCCCCTGATGTTGGTGGTGTCGCAAGGGCCC GTGCGTTTGCCAAGAAATTATCAGATGCTCCTCTTGCGATTGTAGATAAAAGGCGACATGGACACAACGTTGCGGAGGTGATGAACTTAATTGGTGATGT TAAGGGGAAAGTTGCTGTAATGGTGGATGACATGATTGATACTGCGGGGACAATTTCGAAAGGTGCAGCACTATTGCATCAAGAAGGAGCCAGAGAGGTC TATGCCTGCACTACTCACGCTGTTTTCAGTCCTCCTGCAATAGAGAGGCTATCAAGCGGTCTATTCCAAGAGGTCATTGTAACGAACACGATCCCAGTGC TGGAGAAGAACTACTTCCCGCAGCTCACCATCTTGTCCGTGGCTAACCTCCTCGGGGAGACCATATGGCGCGTCCACGATGATTGCTCCGTGAGTATCCT CTCTTCCACCTCCAATCTGTCTGTGAAGTGGGCAGTGGTTTCAATGTAA
AA sequence Show only first row Show all	>Lus10012074 pacid=23161407 polypeptide=Lus10012074 locus=Lus10012074.g ID=Lus10012074.BGIv1.0 annot-version=v1.0 MVTYVWTCFLKRCHLAEPLKFVNGKPSIPVLPSREYSLPSFVASGPQRGSIVNKHDTKLRIFSGTANPSLSQEIACYMGLELGKIDIKRFADGEIYIQLQ ESVRGCDVFLVQPTCPPANENLMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHV YGQPVILDYLASKRICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREV YACTTHAVFSPPAIERLSSGLFQEVIVTNTIPVLEKNYFPQLTILSVANLLGETIWRVHDDCSVSILSSTSNLSVKWAVVSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	0	1
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	3.3	0.8009
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	4.0	0.8405
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	4.0	0.8269
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	5.1	0.8332
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	8.1	0.8229
AT4G02720			unknown protein		Lus10022052 [exp]	8.8	0.8314
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	13.0	0.8223
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	13.4	0.8009
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	16.4	0.8021
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	17.0	0.7913

Compare expression of checked genes

Lus10012074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.