Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19170 1386 / 0 ATPREP1, ATZNMP presequence protease 1 (.1.2) AT1G49630 1366 / 0 ATPREP2 presequence protease 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027907 [exp] 1867 / 0 AT3G19170 1471 / 0.0 presequence protease 1 (.1.2) Lus10019877 [exp] 1522 / 0 AT3G19170 1557 / 0.0 presequence protease 1 (.1.2) Lus10014039 [exp] 1513 / 0 AT3G19170 1560 / 0.0 presequence protease 1 (.1.2) Lus10014038 [exp] 0 / 1 AT3G19170 56 / 5e-13 presequence protease 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103700 [exp] 1476 / 0 AT3G19170 1677 / 0.0 presequence protease 1 (.1.2) Potri.004G142300 [exp] 1466 / 0 AT3G19170 1723 / 0.0 presequence protease 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF08367 [flax] [poplar] M16C_assoc Peptidase M16C associated CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10012075 pacid=23161471 polypeptide=Lus10012075 locus=Lus10012075.g ID=Lus10012075.BGIv1.0 annot-version=v1.0 ATGGAGAATTCTGCTCTTCTCCGATCAACCTCTGCAGCACAAACCCGTCCCGTCTTCTTCTTTCTCCAAAGGCCCTCTCCACTTCGTCGCTCTGCGATTT CGTCGTTTTCCGCCGCTTCTGCCACCTGTCACCCCCTCCTCCGCCCTCGCTCTAGATTGCTCCACGTGCACGCTTCGTCTTCTCCGCCTTCTCCTCTTAG CTCTGATCGGCGTTTCTCTGCCCACGCTGTAGCTACAGAGCCTGCTCCTCAGTTCTCGCCAGAATTCCGTGTGAGATTGGAATGTGATGCACGTGATGAA ATTGTATTGATACTCTATCGCGTTATTAGAGAGATTTCGGAGGTAGTCAATGGAGTTTTATATTACTTCGTGGCTGCAGATGTTGGGGTTTCTGATGAGG TTGCGGAGAAGTTCGGATTCAAGAAGGTGTCTGAACAGTTCATTGATGAGTGCAAATCAAAGGCTGTGCTGTTCAAACATAAGAAGACTGGTGCGGAGGT TATGTCCTTGTCAAATGACGATGAGAATAAGGCGTTTGGAATTGTGTTTCGCACTCCCTTGAAGGATTCATCAGGGGTTGCACACATACTCGAACACAGT GTATTGTGCGGGTCAAGGAAGTATCCCTTGAAGGAGCCGTTTGCGGAGTTGATAAAAGGAAGTTTGAGTACTTATGTGAATGCTCTCACCTTTCCTGATA GAACTTGCTATCCCATTGCTTCTCTAAATGAGAAGGAGTTGTATAATATGGCTGATGTCTATTTGGATGCTGTATTCTTCCCTAAATGTGTGGAGGATGA AGTAATCTTTCGTCAAGAGGGCTGGCATTACGAACTCAATGATCCTTCCAAAGAGATATCTTACAAAGGTGTTGTCTTCAATGAGATGAAAGGTGTCTAT TCTAACCCGGATAATGTTCTGGCCCGGGAAGTTCGCCGTGCTGTTTTTCCGGACAATGCATATGGAGTTGACAGTGGAGGGGACCCAAAAGATATTCCCA AGCTGACATTTGAACAATTTAAGGAGTTTCATCGCAAATATTACCACCCTAGCAATGCAAGGATATGGTTTTATGGAGATGATAATCCATCCGAGAGATT GCGTCTTCTGAGTGAATACCTGGACATGTTTGGGTCAAGTTCATCTCCAAATGAATCGAGAATCAAGCCTCAGAGGCTATTCTCAGAGCCAATAAGGGTC CTTCGTAAGTATCCAGCTAGGGATGGAGGTGACTTGGAAAAGAAGAATATTGTGTGCCTTAACTGGTTGCTTTCTGATAAGCTGCTGGACTTGGAAACTG AGCTTGCCCTTAAAGTCTTGAATCATCTTCTGTTGGGAACTCCTGCTTCTCCATTGATGAAGATCTTGCTCGAAAGTGGTTTAGGAGATGCCTTTTTTGG TGCCGGACTAGAAGACTACCTACTTCAACCTCAATTCAGTGCTGGACTGAAAGGTGTGGCTGTAGAGAATATTCAGAAGGTAGAGGATTTAATATTGAGT ACGCTTGAAAAGTTAAGTGAAGAAGGATTCGAGACGGATCTTGTGGATGCATCCATAAACACGATTGAGTTTGACCTCCGAGAAAACAACACCGGAAGAT TTCCCCGCGGCTTGGAACTGATGTACAAATCCATTGAAAAATGGCTTTATGATTTGGATCCCTTTGAGCCTTTAAAATATGAGAAACCATTGATGGCATT GAAATCCAGAATAGCCGAGGAAGGGCCTAAAGCTGTTTTCTCTCCGTTGATTGAGAAACTCATCCTGAACAATCAACACCGTGCTACTCTGGAAATGCAT CCTGATCCAGAGAAAGCTTCTCGTGATGATTCTTCCGAGAGGGAGATATTGGCAAAGTTGAAAGCGAGTATGACAGAGCAAGATCTTGCTGAGCTAACAC GTGCAACACATGAATTAAGATTGAGGCAGGAAACACCAGACTCCCCGGAAGCTGCGAAAACTTTTCCATTCCTTCGTTTGGATGATATTCCAAAAGAAAG CACTCCCGTTCCCATTGAGGTTGGGGAGATAAATGGAGCAAAAGTACTGCAACATGACCTGTTTACAAATGATATCCTTTATGCGGAAATAGCATTTGAT ATGCGATCACTGAAGCAAGAGCTTCTTCCTTTGGTACCACTTTTCTGCCAATCGCTACTTGAGATGGGTACAAAAGATTTGACTTTTGTCCAACTTAGTC AGCTAATTGGAAGTAAAACAGGGGGCATATCAGTTTTCCCTTTCACATCCTCTATCCGTGGGCAGGCTAACCCATGCAGTCATATAATAGTTCGAGGGAA GGCCATGGCGGGACGTGCAGAAGACTTGTTTCACCTGATTAGATGTGTTCTCCAAGAAGTGCAATTCACAGACCAGCAGCGATTCAAGCAGTTTGTTTCA CAGAGAAAAGCCGGAATGGAGAGTCGTTTACTCGGCGGTGGCCATCAAATTGCAATAACAAGGTTGGATGGCAAGTTTACGACTTCAGGGTGGATTTCTG AGCAAATGGGTGGTGTCAGCTACCTAGACTCCCTGCAAGCTCTTGAACAGAGGGTTGACCAAGACTGGGAAGGAATTTCTGCATCCCTGGAAGAAATTCG GACGTCTTTATTGTCCAAGGATGGCTGCTTGGTCAATCTAACTGCTGACGGAAAAAACCTTGCCAACTCTGAGAAGTACGTCAGCAAGTTACTTGACTTT CTTCCTAGCAACTCACCTGCTGCAGCGGCGTCTTCTTGGATTGCTCGACTTCCTCCCGGAAATGAAGCTATAGTGATCCCTTCACAGGTGAATTTCGTTG GCAAAGCAGTTAACCTTTACGAAACCGGTTATCAAGTCCATGGGAGTGCATATGTCATCTCAAAACACCTCACCAATACATGGCTATGGGATCGAGTTCG TTTGATGGGTGGCGCATACGGAGGAGCGTGCATGCTTAATCCATTCTCAGGAGTGTTTTACTTCATATCTTGGAGTGACCCGAACCTGCTGAAAACCCTC GATACATATGACTCGACTGGAGGTTTCTTACGTGATGCAGAGATCGACAACGATTCTCTCACGAAATCCATAATCGGAACCATTGCGGATGTAGATCCGT ATCAGCTTCCGGATGCCAAAGGTTACAACAGCATGTTGAGGTACTTGCAAGGTTTCACCGAAGAAGAACGGCAACAGAGGCGAGAACAGATACTTTCTAC TAGCTTGAAGGACTTCAAGGAGTTCGCAGACGTTATCGACGCTGTCAAGAACAAAGGCGTCTCGGTAGCTGTGGCGTCTGCAAGCCACGTCGATGCAGCA CACAAGGATTTCCCTGGCTATTTCCAGGTGAAGAAGGTCCTCTAA
AA sequence Show only first row Show all	>Lus10012075 pacid=23161471 polypeptide=Lus10012075 locus=Lus10012075.g ID=Lus10012075.BGIv1.0 annot-version=v1.0 MENSALLRSTSAAQTRPVFFFLQRPSPLRRSAISSFSAASATCHPLLRPRSRLLHVHASSSPPSPLSSDRRFSAHAVATEPAPQFSPEFRVRLECDARDE IVLILYRVIREISEVVNGVLYYFVAADVGVSDEVAEKFGFKKVSEQFIDECKSKAVLFKHKKTGAEVMSLSNDDENKAFGIVFRTPLKDSSGVAHILEHS VLCGSRKYPLKEPFAELIKGSLSTYVNALTFPDRTCYPIASLNEKELYNMADVYLDAVFFPKCVEDEVIFRQEGWHYELNDPSKEISYKGVVFNEMKGVY SNPDNVLAREVRRAVFPDNAYGVDSGGDPKDIPKLTFEQFKEFHRKYYHPSNARIWFYGDDNPSERLRLLSEYLDMFGSSSSPNESRIKPQRLFSEPIRV LRKYPARDGGDLEKKNIVCLNWLLSDKLLDLETELALKVLNHLLLGTPASPLMKILLESGLGDAFFGAGLEDYLLQPQFSAGLKGVAVENIQKVEDLILS TLEKLSEEGFETDLVDASINTIEFDLRENNTGRFPRGLELMYKSIEKWLYDLDPFEPLKYEKPLMALKSRIAEEGPKAVFSPLIEKLILNNQHRATLEMH PDPEKASRDDSSEREILAKLKASMTEQDLAELTRATHELRLRQETPDSPEAAKTFPFLRLDDIPKESTPVPIEVGEINGAKVLQHDLFTNDILYAEIAFD MRSLKQELLPLVPLFCQSLLEMGTKDLTFVQLSQLIGSKTGGISVFPFTSSIRGQANPCSHIIVRGKAMAGRAEDLFHLIRCVLQEVQFTDQQRFKQFVS QRKAGMESRLLGGGHQIAITRLDGKFTTSGWISEQMGGVSYLDSLQALEQRVDQDWEGISASLEEIRTSLLSKDGCLVNLTADGKNLANSEKYVSKLLDF LPSNSPAAAASSWIARLPPGNEAIVIPSQVNFVGKAVNLYETGYQVHGSAYVISKHLTNTWLWDRVRLMGGAYGGACMLNPFSGVFYFISWSDPNLLKTL DTYDSTGGFLRDAEIDNDSLTKSIIGTIADVDPYQLPDAKGYNSMLRYLQGFTEEERQQRREQILSTSLKDFKEFADVIDAVKNKGVSVAVASASHVDAA HKDFPGYFQVKKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	0	1
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	6.9	0.6984
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	10.4	0.7334
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	15.0	0.7669
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10011168 [exp]	17.9	0.7375
AT5G41620			unknown protein		Lus10017543 [exp]	24.7	0.6667
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10042390 [exp]	29.3	0.7163
AT1G18520		TET11	tetraspanin11 (.1)		Lus10009607 [exp]	33.8	0.6100
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	63.6	0.6681
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	66.0	0.6923
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	69.5	0.6900

Compare expression of checked genes

Lus10012075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.