Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33650 981 / 0 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 944 / 0 DRP3B dynamin related protein (.1.2.3) AT5G42080 265 / 3e-78 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 264 / 4e-78 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G61760 262 / 3e-77 ADL1B DYNAMIN-like 1B (.1) AT3G60190 259 / 4e-76 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 259 / 5e-76 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G60500 156 / 2e-39 DRP4C Dynamin related protein 4C (.1) AT1G60530 138 / 6e-36 DRP4A Dynamin related protein 4A (.1) AT1G53140 66 / 9e-11 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027906 [exp] 1353 / 0 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10014041 [exp] 1107 / 0 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 1095 / 0 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 1050 / 0 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027905 [exp] 456 / 2e-144 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10023073 [exp] 267 / 6e-79 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10040117 [exp] 267 / 7e-78 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10003873 [exp] 264 / 9e-78 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 258 / 9e-76 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041800 [exp] 1086 / 0 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 1082 / 0 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 388 / 2e-129 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3) Potri.003G141000 [exp] 280 / 7e-84 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 276 / 2e-82 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 273 / 4e-81 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.014G043600 [exp] 264 / 9e-78 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 262 / 3e-77 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 260 / 2e-76 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 251 / 2e-73 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10012076 pacid=23161394 polypeptide=Lus10012076 locus=Lus10012076.g ID=Lus10012076.BGIv1.0 annot-version=v1.0 ATGGCCGATGAAGAACAAGCAGTGTCCGCTTCGGCGGCGGCGGCGCCTCTGGGATCGTCGGTGATCCCAGTGGTGAACAAGCTCCAGGACATCTTCGCCC AGCTCGGTAGCCAGTCCACGATCGAGCTGCCTCAGGTGGCGGTGGGCGGGCGCCAGAGCAGCGGCAAGTCGAGCGTGCTCGAGGCGCTGGTCGGTAGGGA TTTCCTTCCTCGCGGCGACGACATCTGCACGCGGCGGCCGCTCGTCCTTCAGCTGGTCCAGACGAAGAGGAAAAACGACGGCAGCGAGGAAGAGTGGGGG GAGTTCCTGCACCGGCCTGATAGGCGCTTCGTCGACTTCTCTGAGATCCGGAGTGAAATTGAGGCTGTGACTGCTAAAGAAGCAGGAGGGAACAAAGGTG TCTCAGACAAGCAGATTCGTCTGAAGATTTTCTCCCCCAATGTTCTTGATATAACACTTGTTGATCTTCCTGGGATAACAAAAGTTCCTGTTGGCGACCA GCCCACTGATATTGAATCAAGAATCAGGACGATGATCATGTCATATATTAAAAAACCGAGCTGTCTTATACTTGCTGTTACCGCTGCAAATGCAGACTTG GCAAATTCAGATGCTCTTCAAGTTGCAGGAGTTGCTGATCCGGATGGCTACCGGACCATTGGTGTAATCACAAAGTTGGATATCATGGATAGAGGTACTG ATGCCCGCAATTTGTTACTTGGAAAAGTGATTCCCCTTCGACTTGGTTATGTAGGGGTTGTTAACCGTAGTCAAGAGGATATTAATCTCAACAGAAGTAT AAAGGCTGCACTTGCAGCCGAAGAGAAGTTCTTCCGCAGCCATCCAGTTTATGGTACTGTGGCTGATCGTTGTGGCATCCCCCAGCTTGCCAAGAAGTTG AACAATATCTTAGTGCAGCACATTAAAGCAATACTTCCTGTACTGAAGACTCGCGTAAGCGATGCACTTGTTTCAGTCGCAAAAGACCATGCTAGCTATG GGGAAATCACTGAGTCTAAGGCTGGTCAAGGTGCTATTTTGCTGAATATCATTTCAAAGTACTCTGAAGCTTTTTCTTCAATGTTAGAAGGAAGGAATGA AGGATTGTCAACTGCTCAACTCTCTGGTGTAGCATTTATTGAATATGTTTTTCAGTCAATTTTTGTCAGGACTCTAGAGGAGGTTGATCCTTGTGAGGAT TTGACAGACGATGACATCCGTATCGCCATCCAAAACGCTTGTGGCCCTAAATCTTCGATATTTGTAGCAGTTGTTCCATTTGAACTACTTGTACGGCGAC AAATTGCTCGTCTATTGGATCCAAGCCTGGAGTGTGCCAGATTCATATACGATGAGCTAATTAAGATTAGCCATCGCTGTCTAGTTGTGGTAGATGAACT ACACCGGTTTCCTTTTCTGAGAAAACGCATGGATGAAGTTGTTGGGAATTTCTTACGGGATGGCCTTGAACCGTCCGAGACAATGATTGGGCATCTTATT GAAACTGAGATGGACTACATAAACACGTCACATCCAAACTTTATTGGAGGGACCAAGTCTGTAGAAATGGCAGCACAGCAATTGAAGACTTCAAAGCTGA GTATCGCTGCTTCTAGGCAAAAGGATGGTGTAGAAGCTGATAAAGCACCAGCATCCGAAAGGACTCTGAAATCTCGATCTATTATTGGCAGGCCTGGGGT ACGCCAGATCACAGATGCTGAAAAGGTTGGTCCCTCAGGGAATCATAGCGGATCTTCTTGGGGCATTTCATCAATTTTTGGTAGTAGCGATAGCTCCGTT AGTTCATCGAAAGAGAGCTCAACTAACAAGTCACACATTGAGCCCGTTCATGGAACAACAGACTATGCAGAAAAGAGTGGTAGCTTGATCATTCGACTAC GAGAGCCTCCAACAATCTTGAGACCCACAGATGGCCTTTCAGAGCAGGAGTCTATCGAAATTGCAGCCATTAAGTTGCTCTTACGGTCATACTACGATAT TGTTCGGAAGAACGTTTCAGATTTAGTTCCGAAAACCGTCATGCACTTCCTAGTTCAGCACACAAAACGCGAGCTGCACAATATTTTGATTAAAAAGCTT TACAGGGAGAACCTGTTCGAGGAGATGTTACAAGAGCCCGACGAGATCGCTGTGAAACGAAAGCAGACGAGAGAAACTCTCAAAGTCCTCCAACAGGCGT TTCGAAACTCCCCTTGGAAGCCGAAGCAGCCGAGAGGGGACACAGCACGGTTGCCGATACAATTGGGCTTCCAAGAGTCCGAGGAACCAACAGTTCGAAC GGCTACCACTCGCCTTCTCCAACTCGTTCAAGGTCCTCAAGAAAGTCGTCGCACTCCGGTGAGCTCCATCAACCTTCTTACTCTTAACACCGATTCTAAA GGAAGCAGGGGCAGTGGGGGAGGTGGAGTCTACATGCCAGGTCTGTATCCATCAATCGACTGA
AA sequence Show only first row Show all	>Lus10012076 pacid=23161394 polypeptide=Lus10012076 locus=Lus10012076.g ID=Lus10012076.BGIv1.0 annot-version=v1.0 MADEEQAVSASAAAAPLGSSVIPVVNKLQDIFAQLGSQSTIELPQVAVGGRQSSGKSSVLEALVGRDFLPRGDDICTRRPLVLQLVQTKRKNDGSEEEWG EFLHRPDRRFVDFSEIRSEIEAVTAKEAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPTDIESRIRTMIMSYIKKPSCLILAVTAANADL ANSDALQVAGVADPDGYRTIGVITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDINLNRSIKAALAAEEKFFRSHPVYGTVADRCGIPQLAKKL NNILVQHIKAILPVLKTRVSDALVSVAKDHASYGEITESKAGQGAILLNIISKYSEAFSSMLEGRNEGLSTAQLSGVAFIEYVFQSIFVRTLEEVDPCED LTDDDIRIAIQNACGPKSSIFVAVVPFELLVRRQIARLLDPSLECARFIYDELIKISHRCLVVVDELHRFPFLRKRMDEVVGNFLRDGLEPSETMIGHLI ETEMDYINTSHPNFIGGTKSVEMAAQQLKTSKLSIAASRQKDGVEADKAPASERTLKSRSIIGRPGVRQITDAEKVGPSGNHSGSSWGISSIFGSSDSSV SSSKESSTNKSHIEPVHGTTDYAEKSGSLIIRLREPPTILRPTDGLSEQESIEIAAIKLLLRSYYDIVRKNVSDLVPKTVMHFLVQHTKRELHNILIKKL YRENLFEEMLQEPDEIAVKRKQTRETLKVLQQAFRNSPWKPKQPRGDTARLPIQLGFQESEEPTVRTATTRLLQLVQGPQESRRTPVSSINLLTLNTDSK GSRGSGGGGVYMPGLYPSID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	0	1
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	1.4	0.9061
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	2.2	0.8928
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	3.5	0.9039
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	5.8	0.9100
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	9.4	0.8407
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	11.5	0.8864
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	12.2	0.8880
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	16.2	0.8561
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	17.9	0.8782
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	19.3	0.8728

Compare expression of checked genes

Lus10012076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.