Plant FIBer expression Database

Lus10012077 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27260 50 / 5e-07 unknown protein
AT1G30140 48 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014160
[exp]
446 / 1e-159 ND 47 / 6e-06
Lus10019607
[exp]
325 / 2e-112 ND /
Lus10000529
[exp]
292 / 3e-100 ND 37 / 0.005
Lus10037335
[exp]
286 / 2e-95 AT5G27260 69 / 7e-13 unknown protein
Lus10035759
[exp]
278 / 2e-92 AT5G27260 74 / 6e-15 unknown protein
Lus10032348
[exp]
255 / 2e-83 AT5G27260 52 / 2e-07 unknown protein
Lus10006010
[exp]
233 / 2e-77 ND /
Lus10020974
[exp]
230 / 1e-74 ND /
Lus10011704
[exp]
183 / 6e-58 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G265900
[exp]
42 / 0.0003 AT2G24960 761 / 0.0 unknown protein
Potri.002G200600
[exp]
42 / 0.0004 AT4G02210 471 / 1e-163 unknown protein
Potri.010G215600
[exp]
40 / 0.001 AT4G02550 77 / 7e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10012077 pacid=23146022 polypeptide=Lus10012077 locus=Lus10012077.g ID=Lus10012077.BGIv1.0 annot-version=v1.0
ATGGAGAAAAAAAGAAAGGAAGATGCCAATGACGAGGCGGGACGAAAATACTTTCTCTGGACCGATGAATTGGACCAGATGTTGGTTAAGTGCATACTTA
CATTGGCAGAGCTTAACAAAGTGGACGCGAAAGGAAAGTTTGCGCCTGGAGCGCACAAGGACATAGAGCGAATGATGGAGGAGGAAATACCAGGATGCGG
TGTAAAGGCCGACCCTAACATCATTTCTCGGTGCAATCTTTTGAAGTCCAAATTTTTGGCAGTGCAGGAGTTAAAAGGGCTAAGCGGTGCTCACTGGTGC
GATGTGAATAAGATGGTGATACTTGATGAGACCGTGTATGTGGATTACGTAAAGCATCACGCCCACTGTGCTCATCTGAATCGTGTGTCGTTCCCTTTGT
ACGATGCACTGGAGGCTGTGTTCGGGAACAGGCGTGCGATGGGAGTAAAGATTGTCGGTGTCGAAGAGTTAAAGATGTTGTGCCCTCCAATCGAAGAGCC
AGCAAATTTAATGCTTGGTTGGCAGTCGAATCACGATGGTGATGAACAGGGATTGGGTGGCCAGTCACAAGCCGGCGGTGAACGCTTCATTAACCTTGAT
GATGAAGTTCCCCTAGCAACACCAACCGATAAGGGAAATCAGTCATATGCGACTAGTGGACCAAAGAGGCCTCGTCGATCCTCAAAGGCAGCAACGACCG
GTGACGACGATGAGTTAACACCTTTGTTGAAGGAGACAGTCTGCTCACTGAGAGAATTGGTTGGCGAATCGGCTGCACATAAAAGCCAACGAGCGGTGAT
GTGGACAGAGCTCGGCAAGATAGAAGGTATTACGAAGCGGCAGGCTTTCCGTGTGATTAATAAGAGCGTTAAGGACCATGATTTGATGGACTTTTTTCCA
ATTGGAATCGGTTGA
AA sequence
>Lus10012077 pacid=23146022 polypeptide=Lus10012077 locus=Lus10012077.g ID=Lus10012077.BGIv1.0 annot-version=v1.0
MEKKRKEDANDEAGRKYFLWTDELDQMLVKCILTLAELNKVDAKGKFAPGAHKDIERMMEEEIPGCGVKADPNIISRCNLLKSKFLAVQELKGLSGAHWC
DVNKMVILDETVYVDYVKHHAHCAHLNRVSFPLYDALEAVFGNRRAMGVKIVGVEELKMLCPPIEEPANLMLGWQSNHDGDEQGLGGQSQAGGERFINLD
DEVPLATPTDKGNQSYATSGPKRPRRSSKAATTGDDDELTPLLKETVCSLRELVGESAAHKSQRAVMWTELGKIEGITKRQAFRVINKSVKDHDLMDFFP
IGIG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G27260 unknown protein Lus10012077
[exp]
0 1

Lus10012077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.