Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42950 660 / 0 GYF domain-containing protein (.1) AT1G27430 120 / 6e-27 GYF domain-containing protein (.1) AT1G24300 117 / 7e-26 GYF domain-containing protein (.1.2) AT5G08430 46 / 0.0003 SWIB/MDM2 domain;Plus-3;GYF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032720 [exp] 2862 / 0 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1) Lus10035191 [exp] 140 / 5e-33 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2) Lus10011331 [exp] 122 / 2e-27 AT1G27430 718 / 0.0 GYF domain-containing protein (.1) Lus10003139 [exp] 114 / 5e-25 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10032021 [exp] 104 / 5e-22 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G262300 [exp] 1461 / 0 AT5G42950 714 / 0.0 GYF domain-containing protein (.1) Potri.001G326700 [exp] 136 / 7e-32 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.001G326500 [exp] 134 / 5e-31 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.017G069220 [exp] 134 / 5e-31 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.004G161700 [exp] 47 / 0.0002 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10012078 pacid=23146012 polypeptide=Lus10012078 locus=Lus10012078.g ID=Lus10012078.BGIv1.0 annot-version=v1.0 ATGGCCAGCGCCTTCGCTTCCTCCGATTCCCGCCGCCCACCATCCCTCACTCATCCTCACCAGATCTCCAAAGATGGTCAAGCTTCTGACAAGCCGATTC CTCTTTCTCCTCAGTGGCTTTTACCAAAGCCAGGCGACAATAAGCCTGGGGCAGGAACTGGGGAACTCCATTTTGGCTCTCATCCAGCCCATGACAATCG CGTAGATTGCATCAAGTCTTCTGCTAATTGCGAAGAGATGCATGATATCCATAAGAAGAAGGATATTTCCAGACCTTCTTTGTTTGACATGGAAACTGGT CGTCGTGATCGCTGGCGTGATGAGGAAAGGGATACCAATTTTTCTGTCCGGAAAGATCGCTGGAGGGATGGTGATAAAGAGGTTGGTGACAGCAAACGAG TCGATCGCTGGGTGGATAATTCCCCCGGTAGGCATTATGAAGCCCGGCGTGCCCCTACTGAGCGCTGGACTGATTCGGGTAACAGAGACAACAACCATGA TCAGCGCCGTGAGAGCAAGTGGAACACTCGCTGGGGACCTGATGATAAGGAGGCAGATGGTTCCCGTGAGAAATGGACAGATTCTAGCAAAGATGTTGAT GTTCCTCACGAGAGAGGCTTGGGCGTCCTTCCCACACAAGGGAAGGATGATCGCGAGATCGATCATAGTCGGCCCTGGAGATCTAATCTTCCTCAAAGTC GTGTGAAGGGAGATACTCCTCACCAGACGCCTCCATCAAACAAACAGGGGCCTATGTTTCCATATGGCAGAGGACGTGGAGAAAGTAGTTCGACCTTTTC TGCCGGTCGTGGGAGGATTGGTGTGGGTGGAAATTCTCTAATGAGCGTCCCTAGTCATCCTCAACCTCTAGGTGCCATCCTGGATAAGGCTGAAAATGGC CCTTTAAGATATGGCCGGACGAAATTGCTCGACTTGTTCAGAAGGACTGACATGAGGTCTTCTTGGAATCTCTTGGATGGATTTGTCCATGTCCCATCTC TTACGCAGGAAGAAATGGTGGAGCCACTTGCTTTACGCTCACCTGAAGCAGAGGAAATGGCTTTGTTGAAGGGAATCGAAAAGGGGGATATAATAAGTAG TAGTGCCCCTCAAATGTCAAAAGATGGATCCATGGGGCGGAATACGATGGATTTCACTAATTCAAGAAGGGTCAAGCCAGGCAGCATGGAAGATGGAACT TCTGTTGATGAGAACCTGAAAGGTGGACTTCAGAATTATGTAGACGACTCATCCAACGAGAGGCAATTGCAATACTCTGGTTTCAACTCGAAGTTTGAAT CTTTGCAGGAACAAATTATACAACCTGAAAACAGGTTCAAACTTGAAGCTCCCCGAGAGGAGGTGCCAGTTAGTAGGGAATTGAGTATACAGGGAAACAA TTCTGCATCTCATGCTGCCCCATGGCGGTCTCCATCGTTGGGAGAGAAATTACATGCTTTCTCTCATGAACGAAGCGATATTTCTGATAAGAAAAACTGG ACTTCTTCTCACAAGGATGTCAATACTCAATGGGAAAGCAATTTTGTCTGTCAATCATATTCCAATGATCAACGGAAGGGGAAACCTGGTGAGGATCCAG TTTTCAAACGACAGTTGTCTGCAGTGCTGGATAGAGAACAAGAAGCGAGGAAGCTTTTGCAGCAGTCTCCTGAGAATCTAATTCTCTATTATAAAGATCC TCAGGGCGCTATCCAAGGCCCATTTTCTGGTAGTGATATAATTGGATGGTTTGAAGCTGGATACTTCGGCATTGAGTTGCAAGTCCGCGTAGCAACTGCA TCAAAAGATGTACCGTTTTCTGCACTTGGTGATATAATGCCTCATTTAAGAGCGAAGGCAAGGCCACCTCCTGGTTTTGCTGAGCCAAAGCAAAATGAAA TGTCAGAGCTAACAAATAGGCCGTCTTTTGGTAGCTTCGGACATGCTAGTACAGGTGTAAATGAAGTTGATGTACTTAGAAATGAACCCAGGCATAAAAC TGGGTCAACTACGGAAGCTGAAAATAGATTTCTGGAGTCACTTATGGCTGGAAACTTGGGCAGTATGGGCAATGCATCCCAAGGCGTGCAAGCCTTTGTT GCTGCAAATAGTTCTGGAGGAATGGTGCCATCTGGAGTAGATGGTGGAAATGACCTACACCTCTTGGCAAGGAAAATGGCCCTTGACCGACAGAGATCAA TTCCCAGTACGCATCCATATTGGCCAGGAATGGATCCTTCACCTGTGGGTGTATCTGACAGATCTGTTTCTGGTTGGTCTAATTTCCCTGTCCAAAGTAG CTTAGATCCTCTCCAGGGTAAGATTGACTTCCGTAACGGGCAAATTTTCCCTCCACAAGCCCCGTTTGTGCAGCAGCAAAGGCTGCAGCCTGAAAACTTA GCACCTCTAGCGAATTTAATTGGTCAGGCTATGGATAATCAACCTTCTATGCTGGGACCTGATAAGATAATACAATCAGGTTTGCCACAAGATCCACAAG TACTGAGTATGATGCAGCAGCAATATTTGCTACAGTTGCAACACCAAGCTTCTCTTCCTACACAGCAGCTGTCTGTTTTTGACAAGCTTTTCTTACTTAA GCAACAGCAGAAACAGGAGGAGGAGCAGCAGTTGTTGCGGCAACAACAGCTTCTTTCTCAGGTTTTGTTGGAGCAACATTCTCTCCAGCAGTTCAGTGAG CATTCCTATGGCCATTTGCAGACTGCTTCAATGGCTTCTGGAAGTTCATCGGTTGATCCTTCTGTACTTCAACCTTCAAAGGGCATGTTTGAGTTAGGTT CACGGTTGCCAGTTTCTAGCATTCAAGATGAGTGCATATCTAATTCCATCAACATTCCTCAAGTTGGGCATGATGCCAGTGACAATGCGGATGCAAAATC ATCCTCTGTGCATCTTCCTCATCAATTGCTTGATAACGTTAATGCTCCTAAAAGCTTAGGTGGCTTTCTGCCTGACGAAGTTGATGATATCCATGAAAAC AGATCCTTGCCTGCATCTGGAGTTGTTGAAAGCTCACTGTCATATGGGGCAGCAAACCCGCCTTCAGTTTACAGTTCTCTTCATCATGATTCTCAATTAC AGGCTGCTGATTCACAGCTGCGTAGAACAGTGGATACTTTGGGAACTGAGGAAGGTCAAATAGTTGTTTGTTCTGAATCCATTTCTGATTCTGCTCATCC ACTGTTTGATCAAACCACCAAGGCTGAAAAATCAGCTGAAAGTGAACCTGGAATGCCTGAAAGCCCTAAGGTTCCATATCACGGATTGCAGCAAGCTGTT CAAGAGATAATTAATATTGAGTCTGTTGAGGAGTTAAGAAAGGCTGAACTTCGTGATGTGAAAAAAACATCTGAAAAGAAATCCAGGAAACAGAAGGCTT CCAAGTCTACTTCCTCTTCTGACCAGTCCAAATCTGCATTAAAGGAAAAATCCTTGGAAGCTGCTGGTGACTCCAAGTTAGAATCAGTTGATGGAACTGT GAAAAAGTTACATGCGCCATCTCCGCGAAAGAAGAAAGACAATAAATTGGGTAGTTCCTCTGTAGAAAATGTGGAAAATCAACAGGTTAAGCATTCGATT TCAACTGGTGTGTCACAGGATGATGATGATTTTGCTGAAACTAAGAGTGAAGTCAAAATAGTATCTCCAACCCCGGTGCAAAATTTACCAAGCCTCTCAG CTCAACGAGCTTGGAAACCTGCTCCTGGTTTCAGACCTAAGTCATTGTTGGAAATCCAACAAGAAGAACAATGGAAGGTACACATGGAAGTCTCCGAGAC CACGTCAGCTCCTTGGTCTGGAGTTGTTAGTGGTTTTGAATCTAGACTTACCCGAGAAACACAGCTTGGAGCAAGTAACACAGACTCTTATGCAGGAAAG CCAGGAATTTTACCTGATTCTAAAGGTAAGAAAAGCCAGTTACATGATCTGTTGGCCGAAGAAGTTTTGGCCAAGACTGATGATTCTGAAATGGAGTTGC GGGAAAGTGTGTCTGGCACATCTTCCCAACTACTAGCAACTAGCATTGTGGAACCAGTGGATGATAACAACTTTATCGAGGCTAAGGACACCAAAAAGAG TCGCAAAAAGTCTGGCAAGGGAAAGGGTGCTTTAGCAAAAGTGACAGTGCCTCAGGCTTCTGCTGATATACCAATTAGCTCTAGCCCAGGTGAGAAAGTC AAGGGATCCCGTGCTGTGCAACAAGAGAAGGAAGTATTATTGCCTGCAATTCCCTCAGGTCCTTCTTTTGGTGATTTTGTTTTGTGGAAAGATGAATCCT CTAATCCTCCGCCCTCTCCTGCATGGTCTGCTGACTCGAAGAAGGTTCCTAAACCCACCTCCTTGAGGGACATTTTGAAGGAGCAAGAGAAACGGACTTC TTCTGTTCAACCTCAGATTCCGGTTCCAACTCCTCAGAAGTCGCAGCCTACTCAAGGAGGAATACATGGGAGTGGTCCTGCGTGGTTGCTATCTACTGCT TCTCCATCCAAGGTGGCTTCTCCTATCCAGATTAGCACAACTTCTCAGTCAAAGCATAAGGAAGATGACGACTTATTCTGGGGTCCAGTTCCACAGTCCA AACATGAACCCAAGCAGTCAGAATACCCTCAACTTGCCAGCCAAGGAAGGTGGGGAACCAACACTACACCTGCTAAAGCAACGCTTCCTGGATCATTAAG CCGTCAGAAGTCTGCATCTCCTGCACAGACTTCTGTGAAAGGGAAGAAAAATGCAGAAAAAAATAAGCAAGCAGAGGCAATCGGTTTCAGAGATTGGTGT GAAAGTGAGTGTGTTAGACTGATGGGGTCAAAAGATACGAGCTTCTTGGAGTTCTGCTTGAAGCAATCGAGATCAGAAGCGGAGACGTTGCTGGTTGAGA ATCTTGGATCATTTGACCCAAATCACCAGTTCATTGAAAAATTCCTGAATTATAAGGAGTTGCTGCCGACAGATGTTGTTGACATAGCATTTCAAAGTCG GAAGGTGAGTGCCGGAAACATGAGTTATAATAATAATGCAGTCGTCATCAAGGACTTGGAGCTGGATGCAGCAGAAGCAGCAGGTTCTGCAGATGGATTG TCAAAGGGGGGAGGAGCGAAGAAGAAAGGCAAGAGAGGGAAGAAGGTTAGCTCTGCAGTTTTGGGTTTTAACGTGGTGAGCAACAGAATCAATATGGGAG AGATTCAAACAGCTGAGGATTAA
AA sequence Show only first row Show all	>Lus10012078 pacid=23146012 polypeptide=Lus10012078 locus=Lus10012078.g ID=Lus10012078.BGIv1.0 annot-version=v1.0 MASAFASSDSRRPPSLTHPHQISKDGQASDKPIPLSPQWLLPKPGDNKPGAGTGELHFGSHPAHDNRVDCIKSSANCEEMHDIHKKKDISRPSLFDMETG RRDRWRDEERDTNFSVRKDRWRDGDKEVGDSKRVDRWVDNSPGRHYEARRAPTERWTDSGNRDNNHDQRRESKWNTRWGPDDKEADGSREKWTDSSKDVD VPHERGLGVLPTQGKDDREIDHSRPWRSNLPQSRVKGDTPHQTPPSNKQGPMFPYGRGRGESSSTFSAGRGRIGVGGNSLMSVPSHPQPLGAILDKAENG PLRYGRTKLLDLFRRTDMRSSWNLLDGFVHVPSLTQEEMVEPLALRSPEAEEMALLKGIEKGDIISSSAPQMSKDGSMGRNTMDFTNSRRVKPGSMEDGT SVDENLKGGLQNYVDDSSNERQLQYSGFNSKFESLQEQIIQPENRFKLEAPREEVPVSRELSIQGNNSASHAAPWRSPSLGEKLHAFSHERSDISDKKNW TSSHKDVNTQWESNFVCQSYSNDQRKGKPGEDPVFKRQLSAVLDREQEARKLLQQSPENLILYYKDPQGAIQGPFSGSDIIGWFEAGYFGIELQVRVATA SKDVPFSALGDIMPHLRAKARPPPGFAEPKQNEMSELTNRPSFGSFGHASTGVNEVDVLRNEPRHKTGSTTEAENRFLESLMAGNLGSMGNASQGVQAFV AANSSGGMVPSGVDGGNDLHLLARKMALDRQRSIPSTHPYWPGMDPSPVGVSDRSVSGWSNFPVQSSLDPLQGKIDFRNGQIFPPQAPFVQQQRLQPENL APLANLIGQAMDNQPSMLGPDKIIQSGLPQDPQVLSMMQQQYLLQLQHQASLPTQQLSVFDKLFLLKQQQKQEEEQQLLRQQQLLSQVLLEQHSLQQFSE HSYGHLQTASMASGSSSVDPSVLQPSKGMFELGSRLPVSSIQDECISNSINIPQVGHDASDNADAKSSSVHLPHQLLDNVNAPKSLGGFLPDEVDDIHEN RSLPASGVVESSLSYGAANPPSVYSSLHHDSQLQAADSQLRRTVDTLGTEEGQIVVCSESISDSAHPLFDQTTKAEKSAESEPGMPESPKVPYHGLQQAV QEIINIESVEELRKAELRDVKKTSEKKSRKQKASKSTSSSDQSKSALKEKSLEAAGDSKLESVDGTVKKLHAPSPRKKKDNKLGSSSVENVENQQVKHSI STGVSQDDDDFAETKSEVKIVSPTPVQNLPSLSAQRAWKPAPGFRPKSLLEIQQEEQWKVHMEVSETTSAPWSGVVSGFESRLTRETQLGASNTDSYAGK PGILPDSKGKKSQLHDLLAEEVLAKTDDSEMELRESVSGTSSQLLATSIVEPVDDNNFIEAKDTKKSRKKSGKGKGALAKVTVPQASADIPISSSPGEKV KGSRAVQQEKEVLLPAIPSGPSFGDFVLWKDESSNPPPSPAWSADSKKVPKPTSLRDILKEQEKRTSSVQPQIPVPTPQKSQPTQGGIHGSGPAWLLSTA SPSKVASPIQISTTSQSKHKEDDDLFWGPVPQSKHEPKQSEYPQLASQGRWGTNTTPAKATLPGSLSRQKSASPAQTSVKGKKNAEKNKQAEAIGFRDWC ESECVRLMGSKDTSFLEFCLKQSRSEAETLLVENLGSFDPNHQFIEKFLNYKELLPTDVVDIAFQSRKVSAGNMSYNNNAVVIKDLELDAAEAAGSADGL SKGGGAKKKGKRGKKVSSAVLGFNVVSNRINMGEIQTAED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	0	1
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	1.0	0.9587
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	2.4	0.9339
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	2.4	0.9374
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	3.5	0.9267
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	4.7	0.9140
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	4.9	0.9325
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10007854 [exp]	7.7	0.8813
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	8.1	0.9103
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	8.4	0.9146
AT5G11560			catalytics (.1)		Lus10022144 [exp]	8.5	0.9150

Compare expression of checked genes

Lus10012078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.