Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63340 40 / 0.0002 Protein phosphatase 2C family protein (.1.2) AT3G63320 40 / 0.0002 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000491 [exp] 92 / 2e-22 AT3G63340 1054 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040594 [exp] 45 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214650 [exp] 42 / 3e-05 AT3G63340 1166 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G214500 [exp] 39 / 0.0003 AT3G63340 304 / 3e-94 Protein phosphatase 2C family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012079 pacid=23146027 polypeptide=Lus10012079 locus=Lus10012079.g ID=Lus10012079.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGTCGTCCACTTGTTAAATGCTACCACCAGCCTCAACCAGACAGCTCCACTGCCACTCCTACCAGAGGCCGTTTCCAATGGGTGATGCTTC GAGGTCGAAGAAAGTATCAGGAAGACAAAATCCTCTGCGCTCATGATCTTCACATTCCTTTACTTGATGGTACTAAAATTCATATTCTGATTGAGGTCCA ACAATCTCGGACCTATGCTTCACAAAAGGTGAAGCCTCAGAGTCCATTCTGGAGGGAAGTTGTGAAGAATGCCCAGCCATCTCGTTCCTTGATTCCTAGT CCTCCTGCAGGCAATGTCTCTGAACCTTCATTGCAAGGGAATGAGGCACCTGTAGTGGCTGGAGAGTCATCGTTTGGAGGGGATGAGGGGGGAGGCTAA
AA sequence Show only first row Show all	>Lus10012079 pacid=23146027 polypeptide=Lus10012079 locus=Lus10012079.g ID=Lus10012079.BGIv1.0 annot-version=v1.0 MEESRPLVKCYHQPQPDSSTATPTRGRFQWVMLRGRRKYQEDKILCAHDLHIPLLDGTKIHILIEVQQSRTYASQKVKPQSPFWREVVKNAQPSRSLIPS PPAGNVSEPSLQGNEAPVVAGESSFGGDEGGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012079 [exp]	0	1
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10039087 [exp]	1.0	0.9997
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10023446 [exp]	1.7	0.9952
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	2.0	0.9956
					Lus10019151 [exp]	3.5	0.9907
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10042384 [exp]	3.9	0.9869
AT1G74220			unknown protein		Lus10040518 [exp]	6.0	0.9855
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	7.0	0.9766
AT2G46200			unknown protein		Lus10021211 [exp]	8.7	0.9398
AT1G50380			Prolyl oligopeptidase family p...		Lus10032964 [exp]	9.4	0.9744
AT3G19550			unknown protein		Lus10013901 [exp]	9.9	0.9741

Compare expression of checked genes

Lus10012079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.