Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16230 563 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 559 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 482 / 2e-168 Glycosyl hydrolase family 17 protein (.1) AT5G24318 387 / 4e-131 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 318 / 1e-103 O-Glycosyl hydrolases family 17 protein (.1) AT1G32860 314 / 9e-103 Glycosyl hydrolase superfamily protein (.1) AT5G55180 313 / 4e-102 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 312 / 9e-101 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 309 / 1e-100 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 308 / 2e-99 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032719 [exp] 638 / 0 AT2G16230 430 / 4e-149 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 616 / 0 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 615 / 0 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 371 / 7e-124 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 367 / 3e-123 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 364 / 3e-121 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 358 / 1e-119 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 353 / 7e-118 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10008865 [exp] 350 / 8e-117 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261800 [exp] 649 / 0 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 623 / 0 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 612 / 0 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 550 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 540 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 538 / 0 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 531 / 0 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 531 / 0 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 531 / 0 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 527 / 0 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10012080 pacid=23146018 polypeptide=Lus10012080 locus=Lus10012080.g ID=Lus10012080.BGIv1.0 annot-version=v1.0 ATGGTGATGCTTAGCTATGCAACTTGTTTCCTTCTTCTTACTCTGTTTCTCACCATCAATACCGGACTCTCACAGTCGTACATCGGAATAAACATCGGGC AGGTAGCCGACAACCTCCCATCGCCTTCCGCCACGGCCAAGCTCCTCCAATCCACCACAATTCAGAAAGTCCGGCTTTACGGCGCCGACCCTGCAATCAT CAAGTCGCTGGCAAACACAGGCATCGGAATAGTAATCGGCGCGGCAAACGGCGACATCCCAAGCCTAGCATCCGACCCTAACTCCGCTGCAAGCTGGATA AACACCAATGTCGTCCCTTTCTACCCGGCAAGCAACATCGTCCTAATCACCGTCGGCAACGAGGTTTTCTCTTCTGGCGACCAGAACCTCATGAACAAAC TCCTCCCGGCCATCCAGAATGTGCAGAACGCCCTCATTTCCGCTTCCCTCGGCGACAAGATCAAGGTCTCCACCGTCCATTCCATGGCTGTGATGACGCA ATATTCCAGGGCTGTGATGACGCAATCGGAGCCCCCCTCAGCAGGAATGTTCGACCCGGCATCCGCTGTCTTGATGAAGGGCCTATTGGAATTCAACAAG GCCACAGGCTCCCCCCTCGCAATCAACCCCTACCCGTACTTCGCTTACCGGGACGATCCACGACCCGACACCCTATCGTTTTGCCTATTCCAGCCGAATT CGGGTCGGGTCGACGGGAACACGAAAATCAGGTACATGAACATGTGGGATGCACAATTGGACGCGATCCACTCAGCACTAAACACCGCCGGATTCAAGGA AGTGGATATTCTGGTAGCGGAAACAGGATGGCCTTATAAAGGAGATGGGGACGAGATCGGATCGACTGTGGAGAACGCTAAGGCTTATAACGGCAACTTG ATTGCCCACCTCAGATCTATGGTCGGAACGCCGCTCATGCCAGGGAAATCAATCGATACATATATTTTCGCAATGTACGACGAGGATCTGAAACCTGGGC CGGGATCCGAACGGGGTTTCGGACTCTTTAACTCAGACCTCACTGCCACTTATGACGTTGGATTGATGAGGACCGAAAACAACAACTACAGCAGCGATAG TCAGTTGAGTCCAATGCCGACGACAAAGACAGAAGGTCCAACAGCTGCTCCGCCTCCGAAAGTAGCGAAAACAAAAGGGGAGTGGTGTGTGCCGAAGAAA GGAGTAAAAGAGGCCGAGCTTCAGGCCAATGTGGATTACGCGTGCGGAAAAAATGGGGTTGATTGTAGCCCAATCCAACCTGGCGGGCCTTGCTTCGAGC CTAATACGGTGTCGTCGCACGCTGCTTACGCTATGAATCTCTTGTTTCACAATTTGGGAGGATGGAGTTGTGATTTCTTACATACCGCCATTCTCTCCGC CAAGAATCCTAGCTACAATACTTGCGACTATCCCGGTGGGAGTTGA
AA sequence Show only first row Show all	>Lus10012080 pacid=23146018 polypeptide=Lus10012080 locus=Lus10012080.g ID=Lus10012080.BGIv1.0 annot-version=v1.0 MVMLSYATCFLLLTLFLTINTGLSQSYIGINIGQVADNLPSPSATAKLLQSTTIQKVRLYGADPAIIKSLANTGIGIVIGAANGDIPSLASDPNSAASWI NTNVVPFYPASNIVLITVGNEVFSSGDQNLMNKLLPAIQNVQNALISASLGDKIKVSTVHSMAVMTQYSRAVMTQSEPPSAGMFDPASAVLMKGLLEFNK ATGSPLAINPYPYFAYRDDPRPDTLSFCLFQPNSGRVDGNTKIRYMNMWDAQLDAIHSALNTAGFKEVDILVAETGWPYKGDGDEIGSTVENAKAYNGNL IAHLRSMVGTPLMPGKSIDTYIFAMYDEDLKPGPGSERGFGLFNSDLTATYDVGLMRTENNNYSSDSQLSPMPTTKTEGPTAAPPPKVAKTKGEWCVPKK GVKEAELQANVDYACGKNGVDCSPIQPGGPCFEPNTVSSHAAYAMNLLFHNLGGWSCDFLHTAILSAKNPSYNTCDYPGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	0	1
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	1.0	0.9624
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	2.2	0.9227
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	2.8	0.9252
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	3.2	0.9497
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	6.5	0.9284
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	6.6	0.8978
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	7.1	0.8981
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	8.1	0.9153
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	11.2	0.9106
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10028704 [exp]	11.3	0.8500

Compare expression of checked genes

Lus10012080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.